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WD40 repeat

The WD40 repeat (also known as the WD or beta-transducin repeat) is a short structural motif of approximately 40 amino acids, often terminating in a tryptophan-aspartic acid (W-D) dipeptide. Tandem copies of these repeats typically fold together to form a type of circular solenoid protein domain called the WD40 domain.

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AlphaFold
IPR001680 · PF00400
Available protein structures:
IPR001680 · PF00400
CDD
cd00200
InterPro
IPR001680
PDB
1b9x​, 1b9y​, 1erj​, 1gg2​, 1got​, 1gp2​, 1gxr​, 1nex​, 1nr0​, 1omw​, 1p22​, 1pev​, 1pgu​, 1pi6​, 1s4u​, 1sq9​, 1tbg​, 1u4c​, 1xhm​, 1yfq​, 2bcj​, 2ce8​, 2ce9​, 2trc​ IPR001680…
Pfam
PF00400

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WD40 repeat

Nodes280
Edges279
Triples275
Avg. degree1.99
Density0.007143
Components1

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WD40 repeat

Top relations

related to Examples · 263
WD40 repeat → AAAS, AAMP, According, AHI1, AMBRA1, APAF1, ARPC1A, ARPC1B, ATG16L1, BOP1, BRWD1, BRWD3, BTRC, BUB3, CDC20, CDC40, CDRT1, CHAF1B, CIAO1, CIRH1A
AlphaFold · 2
WD40 repeat → IPR001680, PF00400
Available protein structures: · 2
WD40 repeat → IPR001680, PF00400
CDD · 1
WD40 repeat → cd00200
InterPro · 1
WD40 repeat → IPR001680
PDB · 1
WD40 repeat → 1b9x​, 1b9y​, 1erj​, 1gg2​, 1got​, 1gp2​, 1gxr​, 1nex​, 1nr0​, 1omw​, 1p22​, 1pev​, 1pgu​, 1pi6​, 1s4u​, 1sq9​, 1tbg​, 1u4c​, 1xhm​, 1yfq​, 2bcj​, 2ce8​, 2ce9​, 2trc​ IPR001680…
Pfam · 1
WD40 repeat → PF00400
Pfam clan · 1
WD40 repeat → CL0186
PROSITE · 1
WD40 repeat → PDOC00574
SCOP2 · 1
WD40 repeat → 1gp2 / SCOPe / SUPFAM

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Important terminology

wd40 proteins beta-propeller repeats form protein domain n-terminus c-terminus ribbon beta structure also corepressor fold repeat motif 40 amino acids

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
WD40 repeatAlphaFoldIPR0016801.00infobox
WD40 repeatAlphaFoldPF004001.00infobox
WD40 repeatAvailable protein structures:IPR0016801.00infobox
WD40 repeatAvailable protein structures:PF004001.00infobox
WD40 repeatCDDcd002001.00infobox
WD40 repeatInterProIPR0016801.00infobox
WD40 repeatPDB1b9x​, 1b9y​, 1erj​, 1gg2​, 1got​, 1gp2​, 1gxr​, 1nex​, 1nr0​, 1omw​, 1p22​, 1pev​, 1pgu​, 1pi6​, 1s4u​, 1sq9​, 1tbg​, 1u4c​, 1xhm​, 1yfq​, 2bcj​, 2ce8​, 2ce9​, 2trc​ IPR001680…1.00infobox
WD40 repeatPfamPF004001.00infobox
WD40 repeatPfam clanCL01861.00infobox
WD40 repeatPROSITEPDOC005741.00infobox
WD40 repeatSCOP21gp2 / SCOPe / SUPFAM1.00infobox
WD40 repeatSymbolWD401.00infobox

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