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HDAC3: Interactions, Function & Inhibitors

Histone deacetylase 3 is an enzyme encoded by the HDAC3 gene in both humans and mice.

Language: English [EN]
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HDAC3 topic overview

The analysis highlights Interactions, Function and Inhibitors as prominent areas in the source structure around HDAC3.

Related topics
48
Source areas
5
Connected nodes
53
Extracted relationships
168
Concept neighborhoods
13
Bridge connections
53

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 27 topics
Function · 10 topics
Inhibitors · 5 topics
Role in intestinal homeostasis · 4 topics
Overview · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

3.5.1.98
Aliases
HDAC3, HD3, RPD3, RPD3-2, histone deacetylase 3
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4A69
Band
n/a · 18 19.81 cM|18 B3
Bgee
right hemisphere of cerebellum · right adrenal cortex · left adrenal gland · left adrenal cortex · skin of leg
BioGPS
More reference expression data

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Function

Role in intestinal homeostasis

Inhibitors

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How HDAC3 connects Entity context

The extracted context around HDAC3 shows recurring relationship patterns in the source. For example, HDAC3 → cellular response to fluid shear stress, chromatin binding, chromatin organization, circadian regulation of gene expression, circadian rhythm, cyclin binding, cytoplasm, cytosol, enzyme binding, Golgi apparatus, histone deacetylase activity, histone deacetylase binding, histone deacetylase complex, histone deacetylation, histone H3 deacetylation, histone H4 deacetylation, hydrolase activity, mitotic spindle, NAD-dependent histone deacetylase activity (H3-K14 specific), negative regulation of apoptotic process Another extracted example is HDAC3 → CBFA2T3, CCND1, GATA1, GATA2, GPS2, GTF2I, HDAC4, HDAC5, HDAC7A, HDAC9, MAP3K7IP2, MAPK11, NCOR1, NCOR2, PMLRBBP4, PPARD, PPARG, RELA, RP, RUNX2. Use these groups to spot repeated connection types before inspecting the individual relationships.

HDAC3

Top relations

Gene ontology · 49
HDAC3 → cellular response to fluid shear stress, chromatin binding, chromatin organization, circadian regulation of gene expression, circadian rhythm, cyclin binding, cytoplasm, cytosol, enzyme binding, Golgi apparatus, histone deacetylase activity, histone deacetylase binding, histone deacetylase complex, histone deacetylation, histone H3 deacetylation, histone H4 deacetylation, hydrolase activity, mitotic spindle, NAD-dependent histone deacetylase activity (H3-K14 specific), negative regulation of apoptotic process
related to Interactions · 26
HDAC3 → CBFA2T3, CCND1, GATA1, GATA2, GPS2, GTF2I, HDAC4, HDAC5, HDAC7A, HDAC9, MAP3K7IP2, MAPK11, NCOR1, NCOR2, PMLRBBP4, PPARD, PPARG, RELA, RP, RUNX2
Bgee · 20
HDAC3 → anterior pituitary, genital tubercle, granulocyte, left adrenal cortex, left adrenal gland, lip, muscle of thigh, neural tube, primary visual cortex, right adrenal cortex, right hemisphere of cerebellum, right lobe of thyroid gland, right ovary, skin of abdomen, skin of leg, spermatocyte, superior frontal gyrus, tail of embryo, ventricular zone, yolk sac
RNA expression pattern · 20
HDAC3 → anterior pituitary, genital tubercle, granulocyte, left adrenal cortex, left adrenal gland, lip, muscle of thigh, neural tube, primary visual cortex, right adrenal cortex, right hemisphere of cerebellum, right lobe of thyroid gland, right ovary, skin of abdomen, skin of leg, spermatocyte, superior frontal gyrus, tail of embryo, ventricular zone, yolk sac
related to Function · 10
HDAC3 → Class, DNA, HDACs, Histones, It, NCOR, NCOR2, Posttranslational, SMRT, Unlike
related to Role in intestinal homeostasis · 9
HDAC3 → Although, Histone, However, IEC, IECs, In, Paneth, Studies, These
related to External links · 6
HDAC3 → Medicine, Medicine Medical Subject Headings, MeSH, National Library, This, United States National Library
Band · 2
HDAC3 → 18 19.81 cM|18 B3, n/a
Chr. · 2
HDAC3 → Chromosome 18 (mouse), Chromosome 5 (human)
End · 2
HDAC3 → 141,636,870 bp, 38,088,069 bp

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

histone bp gene human deacetylase chr band mice chromosome intestinal enzyme function location chromatin activity mouse expression protein external commensal

HDAC3 relationships Subject–Predicate–Object triples

TTTA extracted 168 structured relationships around HDAC3. Examples in this analysis include HDAC3 → 3.5.1.98 → ↗ and HDAC3 → Aliases → HDAC3, HD3, RPD3, RPD3-2, histone deacetylase 3. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
HDAC33.5.1.981.00infobox
HDAC3AliasesHDAC3, HD3, RPD3, RPD3-2, histone deacetylase 31.00infobox
HDAC3Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4A691.00infobox
HDAC3Bandn/a1.00infobox
HDAC3Band18 19.81 cM|18 B31.00infobox
HDAC3Bgeeright hemisphere of cerebellum1.00infobox
HDAC3Bgeeright adrenal cortex1.00infobox
HDAC3Bgeeleft adrenal gland1.00infobox
HDAC3Bgeeleft adrenal cortex1.00infobox
HDAC3Bgeeskin of leg1.00infobox
HDAC3Bgeegranulocyte1.00infobox
HDAC3Bgeeskin of abdomen1.00infobox
HDAC3Bgeeanterior pituitary1.00infobox
HDAC3Bgeeright ovary1.00infobox
HDAC3Bgeeright lobe of thyroid gland1.00infobox
HDAC3Bgeespermatocyte1.00infobox
HDAC3Bgeeventricular zone1.00infobox
HDAC3Bgeegenital tubercle1.00infobox
HDAC3Bgeetail of embryo1.00infobox
HDAC3Bgeesuperior frontal gyrus1.00infobox
HDAC3Bgeemuscle of thigh1.00infobox
HDAC3Bgeelip1.00infobox
HDAC3Bgeeyolk sac1.00infobox
HDAC3Bgeeprimary visual cortex1.00infobox
HDAC3Bgeeneural tube1.00infobox
HDAC3BioGPSMore reference expression data1.00infobox
HDAC3Chr.Chromosome 5 (human)1.00infobox
HDAC3Chr.Chromosome 18 (mouse)1.00infobox
HDAC3DatabasesNCBI: entry; OMA: entry1.00infobox
HDAC3End141,636,870 bp1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around HDAC3 bring nearby vocabulary together. In this analysis, examples include Gene, Histone and Activity. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • HDAC3
    • Gene
    • Histone
    • Activity
    • Expression
    • Function
    • Human
    • Interact
    • Protein
    • Role
    • Search
    • Location
    • Chromosome
  • hdac3
    • Gene
    • Histone
    • Activity
    • Expression
    • Function
    • Human
    • Interact
    • Protein
    • Role
    • Search
    • Location
    • Chromosome
  • enzyme
    • Search
    • Activity
    • Gene
    • Location
    • Chromosome
    • Function
    • Histone
    • Bp
    • Chr
    • External
    • Human
    • Primary
  • gene
    • Expression
    • Location
    • Chromosome
    • Hdac3
    • Bp
    • Chr
    • Human
    • Cm
    • End
    • Mouse
    • Search
    • Activity
  • function
    • Search
    • Activity
    • Location
    • Chromosome
    • Histone
    • Bp
    • Chr
    • Human
    • Intestinal
    • External
    • Gene
    • Primary
  • chromatin
    • Primary
    • Cm
    • End
    • Mouse
    • Nucleus
    • Protein
    • Search
    • Enzyme
    • Expression
    • Histone
    • Location
    • Chromosome
  • role in intestinal homeostasis
    • Interactions
    • Mice
    • Homeostasis
    • Intestinal
    • Commensal
    • Inhibitors
    • Role
    • Search
    • Location
    • Human
    • Expression
  • intestinal epithelial cells
    • Mice
    • Homeostasis
    • Interactions
    • Commensal
    • Inhibitors
    • Role
    • Search
    • Expression
    • Location
    • Human

Connections between topic areas Semantic bridges

For HDAC3, one of the stronger structural bridges in this analysis connects HDAC3 with Interactions. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
HDAC3Interactions · splits 26 ⟂ 28
HDAC3Function · splits 43 ⟂ 11
HDAC3Inhibitors · splits 48 ⟂ 6
HDAC3Role in intestinal homeostasis · splits 49 ⟂ 5
HDAC3Overview · splits 51 ⟂ 3

Map overview Semantic statistics

HDAC3

Nodes54
Edges53
Triples168
Avg. degree1.96
Density0.037037
Components1

Source & methodology

TTTA analyzes the structure around HDAC3 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions, Function & Inhibitors, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — HDAC3 · EN edition · Analysis: TopicsToTalkAbout

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