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HDAC4: Interactions, Function & Clinical significance

Histone deacetylase 4, also known as HDAC4, is a protein that in humans is encoded by the HDAC4 gene.

Language: English [EN]
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HDAC4 topic overview

The analysis highlights Interactions, Function and Clinical significance as prominent areas in the source structure around HDAC4.

Related topics
29
Source areas
4
Connected nodes
33
Extracted relationships
176
Concept neighborhoods
15
Bridge connections
33

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 15 topics
Function · 9 topics
Clinical significance · 3 topics
Overview · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

3.5.1.98
Aliases
HDAC4, AHO3, BDMR, HA6116, HD4, HDAC-4, HDAC-A, HDACA, histone deacetylase 4, NEDCHID
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2H8N, 2O94, 2VQJ, 2VQM, 2VQO, 2VQQ, 2VQV, 2VQW, 3UXG, 3UZD, 3V31, 4CBT, 4CBY, 5A2S
Band
2q37.3 · 1|1 D
Bgee
sural nerve · glutes · gastrocnemius muscle · tibialis anterior muscle · muscle of thigh
BioGPS
More reference expression data

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Function

Clinical significance

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How HDAC4 connects Entity context

The extracted context around HDAC4 shows recurring relationship patterns in the source. For example, HDAC4 → A band, actomyosin, B cell activation, B cell differentiation, cardiac muscle hypertrophy in response to stress, cellular response to mechanical stimulus, cellular response to parathyroid hormone stimulus, cellular response to tumor necrosis factor, chromatin binding, chromatin organization, chromatin remodeling, cytoplasm, cytosol, DNA binding, histone deacetylase activity, histone deacetylase binding, histone deacetylase complex, histone deacetylation, histone H3 deacetylation, histone H4 deacetylation Another extracted example is HDAC4 → blood, deltoid muscle, dentate gyrus of hippocampal formation granule cell, endothelial cell, gastrocnemius muscle, gastrula, glutes, granulocyte, interventricular septum, lip, muscle layer of sigmoid colon, muscle of thigh, muscle tissue, otic vesicle, Rostral migratory stream, skeletal muscle tissue, Skeletal muscle tissue of biceps brachii, sural nerve, tibialis anterior muscle. Use these groups to spot repeated connection types before inspecting the individual relationships.

HDAC4

Top relations

Gene ontology · 77
HDAC4 → A band, actomyosin, B cell activation, B cell differentiation, cardiac muscle hypertrophy in response to stress, cellular response to mechanical stimulus, cellular response to parathyroid hormone stimulus, cellular response to tumor necrosis factor, chromatin binding, chromatin organization, chromatin remodeling, cytoplasm, cytosol, DNA binding, histone deacetylase activity, histone deacetylase binding, histone deacetylase complex, histone deacetylation, histone H3 deacetylation, histone H4 deacetylation
Bgee · 19
HDAC4 → blood, deltoid muscle, dentate gyrus of hippocampal formation granule cell, endothelial cell, gastrocnemius muscle, gastrula, glutes, granulocyte, interventricular septum, lip, muscle layer of sigmoid colon, muscle of thigh, muscle tissue, otic vesicle, Rostral migratory stream, skeletal muscle tissue, Skeletal muscle tissue of biceps brachii, sural nerve, tibialis anterior muscle
RNA expression pattern · 19
HDAC4 → blood, deltoid muscle, dentate gyrus of hippocampal formation granule cell, endothelial cell, gastrocnemius muscle, gastrula, glutes, granulocyte, interventricular septum, lip, muscle layer of sigmoid colon, muscle of thigh, muscle tissue, otic vesicle, Rostral migratory stream, skeletal muscle tissue, Skeletal muscle tissue of biceps brachii, sural nerve, tibialis anterior muscle
related to Interactions · 14
HDAC4 → BCL6, BTB, BTG2, CBX5, GATA1, HDAC3, MAPK1, MAPK3, MEF2C, Myocyte-specific, Nuclear, Testicular, YWHAB, YWHAE
related to Function · 13
HDAC4 → DNA, Furthermore, HDAC3, Histone, Histones, II, It, MEF2C, MEF2D, RbAp48, TGFbeta1-induced, The, This
related to External links · 6
HDAC4 → Medicine, Medicine Medical Subject Headings, MeSH, National Library, This, United States National Library
related to Clinical significance · 3
HDAC4 → Harvard University, Reduced, Studies
Band · 2
HDAC4 → 1|1 D, 2q37.3
Chr. · 2
HDAC4 → Chromosome 1 (mouse), Chromosome 2 (human)
End · 2
HDAC4 → 239,401,654 bp, 92,123,421 bp

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

histone bp protein human deacetylase gene chr chromosome band also transcription location activity mouse dna factor function external encoded search

HDAC4 relationships Subject–Predicate–Object triples

TTTA extracted 176 structured relationships around HDAC4. Examples in this analysis include HDAC4 → 3.5.1.98 → ↗ and HDAC4 → Aliases → HDAC4, AHO3, BDMR, HA6116, HD4, HDAC-4, HDAC-A, HDACA, histone deacetylase 4, NEDCHID. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
HDAC43.5.1.981.00infobox
HDAC4AliasesHDAC4, AHO3, BDMR, HA6116, HD4, HDAC-4, HDAC-A, HDACA, histone deacetylase 4, NEDCHID1.00infobox
HDAC4Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2H8N, 2O94, 2VQJ, 2VQM, 2VQO, 2VQQ, 2VQV, 2VQW, 3UXG, 3UZD, 3V31, 4CBT, 4CBY, 5A2S1.00infobox
HDAC4Band2q37.31.00infobox
HDAC4Band1|1 D1.00infobox
HDAC4Bgeesural nerve1.00infobox
HDAC4Bgeeglutes1.00infobox
HDAC4Bgeegastrocnemius muscle1.00infobox
HDAC4Bgeetibialis anterior muscle1.00infobox
HDAC4Bgeemuscle of thigh1.00infobox
HDAC4Bgeemuscle layer of sigmoid colon1.00infobox
HDAC4Bgeeendothelial cell1.00infobox
HDAC4Bgeedeltoid muscle1.00infobox
HDAC4BgeeSkeletal muscle tissue of biceps brachii1.00infobox
HDAC4Bgeeblood1.00infobox
HDAC4Bgeeotic vesicle1.00infobox
HDAC4Bgeegranulocyte1.00infobox
HDAC4Bgeegastrula1.00infobox
HDAC4BgeeRostral migratory stream1.00infobox
HDAC4Bgeedentate gyrus of hippocampal formation granule cell1.00infobox
HDAC4Bgeelip1.00infobox
HDAC4Bgeeinterventricular septum1.00infobox
HDAC4Bgeemuscle tissue1.00infobox
HDAC4Bgeeskeletal muscle tissue1.00infobox
HDAC4BioGPSMore reference expression data1.00infobox
HDAC4Chr.Chromosome 2 (human)1.00infobox
HDAC4Chr.Chromosome 1 (mouse)1.00infobox
HDAC4DatabasesNCBI: entry; OMA: entry1.00infobox
HDAC4End239,401,654 bp1.00infobox
HDAC4End92,123,421 bp1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around HDAC4 bring nearby vocabulary together. In this analysis, examples include Histone, Protein and Gene. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • HDAC4
    • Histone
    • Protein
    • Gene
    • Human
    • Development
    • Differentiation
    • Function
    • Muscle
    • Search
    • Shown
    • Zinc
    • Activity
  • hdac4
    • Histone
    • Protein
    • Gene
    • Human
    • Development
    • Differentiation
    • Function
    • Muscle
    • Search
    • Shown
    • Zinc
    • Activity
  • gene
    • Location
    • Histone
    • Bp
    • Chr
    • Chromosome
    • Human
    • End
    • Function
    • Ii
    • Mouse
    • Search
    • Activity
  • cell cycle
    • Regulation
    • Complex
    • Deacetylation
    • Development
    • Differentiation
    • End
    • Function
    • Ii
    • Mouse
    • Muscle
    • Search
    • Zinc
  • chromosome
    • Bp
    • Human
    • Location
    • Band
    • Gene
    • Deacetylation
    • End
    • Function
    • Mouse
    • Search
    • Dna
    • Factor
  • histone deacetylase
    • Histone
    • Gene
    • Activity
    • Hdac4
    • Protein
    • Human
    • Transcription
    • Chromosome
    • Encoded
    • Function
    • Ii
    • Search
  • zinc finger and btb domain-containing protein 16
    • Factor
    • Cell
    • Regulation
    • Complex
    • Deacetylation
    • Development
    • Differentiation
    • End
    • Function
    • Hdac3
    • Ii
    • Interact
  • function
    • Search
    • Activity
    • Location
    • Cell
    • Regulation
    • Bp
    • Chr
    • Chromosome
    • Gene
    • Human
    • Complex
    • Deacetylation

Connections between topic areas Semantic bridges

For HDAC4, one of the stronger structural bridges in this analysis connects HDAC4 with Interactions. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
HDAC4Interactions · splits 18 ⟂ 16
HDAC4Function · splits 24 ⟂ 10
HDAC4Clinical significance · splits 30 ⟂ 4
HDAC4Overview · splits 31 ⟂ 3

Map overview Semantic statistics

HDAC4

Nodes34
Edges33
Triples176
Avg. degree1.94
Density0.058824
Components1

Source & methodology

TTTA analyzes the structure around HDAC4 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions, Function & Clinical significance, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — HDAC4 · EN edition · Analysis: TopicsToTalkAbout

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