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TATA box

In molecular biology, the TATA box (also called the Goldberg–Hogness box) is a sequence of DNA found in the core promoter region of genes in archaea and eukaryotes. The bacterial homolog of the TATA box is called the Pribnow box which has a shorter consensus sequence.

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Features

Structure

Function

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Clinical significance

Genetic engineering

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TATA box

Nodes153
Edges152
Triples192
Avg. degree1.99
Density0.013072
Components1

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TATA box

Top relations

related to history · 23
TATA box → Also, AT-rich, Box, DPE, Drosophila, Drosophila TATA-less, Even, II, In, In Drosophila, Inr, IRF-1, Most, One, TATA, TATA-binding, TATA-less, TBP, TFIID, The
related to Role in transcription initiation · 22
TATA box → Asn117, Asn27, DNA, Formation, Four, II, Ile152, Leu163, Numerous, Phe148, Phe165, Phe57, Phe74, TATA, TATA-binding, TBP, TFIID, The TATA-box, Thr173, Thr82
related to Location · 16
TATA box → II, In, Promoter, RNA, Rpb4/Rbp7, SAGA, SAGA/TATA, TATA, TATA-binding, TBP, TFIID, TFIID/TBP, The, The TATA, When, While
related to Point mutations · 16
TATA box → CATAAAA, For, HeLa, However, KD, Leyden, Point, Savinkova, Some, Studies, TATA, TATAAAA, TATACAA, TBP, Thalassemia, This
related to Cancer therapy · 15
TATA box → Cisplatin, Compounds, DNA, DNA-binding, Example, However, II, In, Pharmaceutical, SN-38, TATA, TATA-binding, TBP, The, This
related to Sequence and prevalence · 15
TATA box → A/G, A/T, DCE, DNA, Generally, Genes, In, Saccharomyces, Similarly, TATA, TATA-box, TATA-containing, TATA-less, The TATA, These
related to Discovery · 13
TATA box → American, Basel, David Hogness, DNA, Drosophila, II, Michael Goldberg, RNA, Switzerland, TATA, The TATA, They, University
related to Analogous sequences · 12
TATA box → CAAT, CAAT TF, CAT, CTFs, GGCCAATCT, In, It, Pribnow, RNA, TATA, The CAAT, The Pribnow
related to TATA box modification · 12
TATA box → Arabidopsis, As, Compared, Earth, Earth's, Evolutionary, In, IRT1, Malus, TATA, TFIID, With
related to Diseases · 10
TATA box → Carriers, Gastric, Longer TATA, Mutations, PG2, TATA, TATA-binding, TBP, The TATA, This

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Important terminology

box tata transcription tbp sequence promoter dna genes protein gene mutations binding tata-binding upstream also consensus promoters site found eukaryotic

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
TATA boxis abinding site of the TATA-binding protein0.90text
TATA boxis acomponent of the eukaryotic core promoter and generally contains the consensus sequence 5'-TATA0.90text
enhancersinstance ofGene transcription by RNA polymerase II depends on the regulation of the core promoter by long-range regulatory elements0.80text
silencersinstance ofGene transcription by RNA polymerase II depends on the regulation of the core promoter by long-range regulatory elements0.80text
insertionsinstance ofmutations0.80text
deletionsinstance ofmutations0.80text
and point mutations to this consensus sequence can result in phenotypic changesinstance ofmutations0.80text
cell growthinstance ofTATA-containing genes are not involved in essential cellular functions0.80text
DNA replicationinstance ofTATA-containing genes are not involved in essential cellular functions0.80text
transcriptioninstance ofTATA-containing genes are not involved in essential cellular functions0.80text
and translation because of their highly regulated nature.The TATA box is usually located 25-35 base pairs upstream of the transcription start siteinstance ofTATA-containing genes are not involved in essential cellular functions0.80text
HIV-1instance ofThis poses a risk for developing jaundice in newborns.MicroRNAs also play a role in replicating viruses0.80text

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