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PTPRT: Regions, Substrates & Expression and function in the developing nervous system

Receptor-type tyrosine-protein phosphatase T is an enzyme that in humans is encoded by the PTPRT gene.

Language: English [EN]
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PTPRT topic overview

The analysis highlights Regions, Substrates and Expression and function in the developing nervous system as prominent areas in the source structure around PTPRT.

Related topics
40
Source areas
8
Connected nodes
48
Extracted relationships
152
Concept neighborhoods
17
Bridge connections
48

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Substrates · 14 topics
Expression and function in the developing nervous system · 9 topics
Interacting proteins · 4 topics
Function · 3 topics
Overview · 3 topics
Regulation of gene expression · 3 topics
Structure · 3 topics
Homophilic binding · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

3.1.3.48
Aliases
PTPRT, RPTPrho, protein tyrosine phosphatase, receptor type T, protein tyrosine phosphatase receptor type T, RPTP-rho, R-PTP-T
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2OOQ
Band
20q12-q13.11 · 2 H2|2 81.91 cM
Bgee
Brodmann area 10 · middle temporal gyrus · Brodmann area 23 · frontal pole · superior frontal gyrus
BioGPS
More reference expression data

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Function

Structure

Homophilic binding

Regulation of gene expression

Expression and function in the developing nervous system

Substrates

Interacting proteins

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How PTPRT connects Entity context

The extracted context around PTPRT shows recurring relationship patterns in the source. For example, PTPRT → alpha-catenin binding, beta-catenin binding, cadherin binding, cell adhesion, cell surface, cellular response to interleukin-6, delta-catenin binding, dephosphorylation, gamma-catenin binding, homophilic cell adhesion via plasma membrane adhesion molecules, hydrolase activity, integral component of membrane, integral component of plasma membrane, membrane, negative regulation of cell migration, negative regulation of receptor signaling pathway via STAT, peptidyl-tyrosine dephosphorylation, peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity, phosphatase activity, phosphoprotein phosphatase activity Another extracted example is PTPRT → AP-2, C/EBP, CdxA, DNA, En-1, Evaluation, GATA-1, GATA-2, GKLF, HoxA3, Ik-2, Msx-1, Myb, NF-1, Oct-1, Pax-4, PTPrho, RE-1, RE1-silencing, REST. Use these groups to spot repeated connection types before inspecting the individual relationships.

PTPRT

Top relations

Gene ontology · 30
PTPRT → alpha-catenin binding, beta-catenin binding, cadherin binding, cell adhesion, cell surface, cellular response to interleukin-6, delta-catenin binding, dephosphorylation, gamma-catenin binding, homophilic cell adhesion via plasma membrane adhesion molecules, hydrolase activity, integral component of membrane, integral component of plasma membrane, membrane, negative regulation of cell migration, negative regulation of receptor signaling pathway via STAT, peptidyl-tyrosine dephosphorylation, peptidyl-tyrosine dephosphorylation involved in inactivation of protein kinase activity, phosphatase activity, phosphoprotein phosphatase activity
related to Regulation of gene expression · 26
PTPRT → AP-2, C/EBP, CdxA, DNA, En-1, Evaluation, GATA-1, GATA-2, GKLF, HoxA3, Ik-2, Msx-1, Myb, NF-1, Oct-1, Pax-4, PTPrho, RE-1, RE1-silencing, REST
related to Structure · 22
PTPRT → A5, Alternative, Comparison, FNIII, Ig-like, III-like, MAM, PCP-2, PTP, PTPkappa, PTPmu, PTPrho, PTPRK, PTPRM, PTPRU, R2B, RPTP, RPTPs, RPTPs PTPmu, The
Bgee · 18
PTPRT → Brodmann area 10, Brodmann area 23, Brodmann area 46, central gray substance of midbrain, dentate gyrus of hippocampal formation granule cell, dorsal tegmental nucleus, dorsolateral prefrontal cortex, frontal pole, lumbar spinal ganglion, middle temporal gyrus, nucleus of stria terminalis, olfactory bulb, orbitofrontal cortex, piriform cortex, postcentral gyrus, primary visual cortex, superior colliculus, superior frontal gyrus
RNA expression pattern · 18
PTPRT → Brodmann area 10, Brodmann area 23, Brodmann area 46, central gray substance of midbrain, dentate gyrus of hippocampal formation granule cell, dorsal tegmental nucleus, dorsolateral prefrontal cortex, frontal pole, lumbar spinal ganglion, middle temporal gyrus, nucleus of stria terminalis, olfactory bulb, orbitofrontal cortex, piriform cortex, postcentral gyrus, primary visual cortex, superior colliculus, superior frontal gyrus
related to Expression and function in the developing nervous system · 7
PTPRT → At, INL, Its, PTPrho, Specifically, The, Xenopus
related to Expression and function in cancer · 6
PTPRT → Evaluation, PTPrho, RPTP, RT-PCR, The, The PTPrho
Band · 2
PTPRT → 2 H2|2 81.91 cM, 20q12-q13.11
Chr. · 2
PTPRT → Chromosome 2 (mouse), Chromosome 20 (human)
End · 2
PTPRT → 162,503,067 bp, 43,189,970 bp

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

ptprho tyrosine protein activity phosphatase domain human also cancer gene region catalytic bp function expression chr band cells observed cell

PTPRT relationships Subject–Predicate–Object triples

TTTA extracted 152 structured relationships around PTPRT. Examples in this analysis include PTPRT → 3.1.3.48 → ↗ and PTPRT → Aliases → PTPRT, RPTPrho, protein tyrosine phosphatase, receptor type T, protein tyrosine phosphatase receptor type T, RPTP-rho, R-PTP-T. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
PTPRT3.1.3.481.00infobox
PTPRTAliasesPTPRT, RPTPrho, protein tyrosine phosphatase, receptor type T, protein tyrosine phosphatase receptor type T, RPTP-rho, R-PTP-T1.00infobox
PTPRTAvailable structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2OOQ1.00infobox
PTPRTBand20q12-q13.111.00infobox
PTPRTBand2 H2|2 81.91 cM1.00infobox
PTPRTBgeeBrodmann area 101.00infobox
PTPRTBgeemiddle temporal gyrus1.00infobox
PTPRTBgeeBrodmann area 231.00infobox
PTPRTBgeefrontal pole1.00infobox
PTPRTBgeesuperior frontal gyrus1.00infobox
PTPRTBgeeBrodmann area 461.00infobox
PTPRTBgeeprimary visual cortex1.00infobox
PTPRTBgeeorbitofrontal cortex1.00infobox
PTPRTBgeepostcentral gyrus1.00infobox
PTPRTBgeedorsolateral prefrontal cortex1.00infobox
PTPRTBgeepiriform cortex1.00infobox
PTPRTBgeenucleus of stria terminalis1.00infobox
PTPRTBgeecentral gray substance of midbrain1.00infobox
PTPRTBgeelumbar spinal ganglion1.00infobox
PTPRTBgeesuperior colliculus1.00infobox
PTPRTBgeeolfactory bulb1.00infobox
PTPRTBgeedorsal tegmental nucleus1.00infobox
PTPRTBgeedentate gyrus of hippocampal formation granule cell1.00infobox
PTPRTBioGPSMore reference expression data1.00infobox
PTPRTChr.Chromosome 20 (human)1.00infobox
PTPRTChr.Chromosome 2 (mouse)1.00infobox
PTPRTDatabasesNCBI: entry; OMA: entry1.00infobox
PTPRTEnd43,189,970 bp1.00infobox
PTPRTEnd162,503,067 bp1.00infobox
PTPRTEnsemblENSG000001960901.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around PTPRT bring nearby vocabulary together. In this analysis, examples include Binding, Expressed and Expression. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • human accelerated region
    • Chromosome
    • Bp
    • Chr
    • Band
    • Binding
    • Homophilic
    • Bcr
    • Fyn
    • Expression
    • Function
    • Phosphatase
    • Ptprt
  • protein tyrosine phosphatase
    • Activity
    • Domain
    • Phosphatase
    • Tyrosine
    • Cell
    • Gene
    • Second
    • Bcr
    • Cancer
    • Catalytic
    • Paxillin
    • Phosphorylation
  • tumor suppressor in cancer
    • Mutations
    • Cells
    • Function
    • Observed
    • Domain
    • Tyrosine
    • Phosphatase
    • Cell-cell
    • May
    • Second
    • Ptprho
    • Catalytic
  • loss of function
    • Cancer
    • Expression
    • Binding
    • Chromosome
    • Homophilic
    • Bp
    • Chr
    • Gene
    • May
    • Protein
    • Expressed
    • Human
  • fyn tyrosine kinase
    • Phosphatase
    • Activity
    • Cancer
    • Paxillin
    • Phosphorylation
    • Domain
    • Region
    • Catalytic
    • Also
    • Protein
    • Bcr
    • Binding
  • function
    • Cancer
    • Expression
    • Binding
    • Chromosome
    • Homophilic
    • Bp
    • Chr
    • Gene
    • May
    • Protein
    • Expressed
    • Human
  • regulation of gene expression
    • Chromosome
    • Bp
    • Chr
    • Human
    • Phosphatase
    • Band
    • Binding
    • Homophilic
    • Function
    • Ptprt
    • Expression
    • Gene
  • expression and function in the developing nervous system
    • Cancer
    • Expression
    • Function
    • Binding
    • Chromosome
    • Homophilic
    • Ptprt
    • Bp
    • Chr
    • Gene
    • May
    • Protein

Connections between topic areas Semantic bridges

For PTPRT, one of the stronger structural bridges in this analysis connects PTPRT with Substrates. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
PTPRTSubstrates · splits 34 ⟂ 15
PTPRTExpression and function in the developing nervous system · splits 39 ⟂ 10
PTPRTInteracting proteins · splits 44 ⟂ 5
PTPRTOverview · splits 45 ⟂ 4
PTPRTFunction · splits 45 ⟂ 4
PTPRTStructure · splits 45 ⟂ 4
PTPRTRegulation of gene expression · splits 45 ⟂ 4

Map overview Semantic statistics

PTPRT

Nodes49
Edges48
Triples152
Avg. degree1.96
Density0.040816
Components1

Source & methodology

TTTA analyzes the structure around PTPRT to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Regions, Substrates & Expression and function in the developing nervous system, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — PTPRT · EN edition · Analysis: TopicsToTalkAbout

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