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CLCN5: Localization and function, Clinical significance & Gene

The H+/Cl- exchange transporter 5 is a protein that in humans is encoded by the CLCN5 gene.

Language: English [EN]
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CLCN5 topic overview

The analysis highlights Localization and function, Clinical significance and Gene as prominent areas in the source structure around CLCN5.

Related topics
89
Source areas
5
Connected nodes
94
Extracted relationships
131
Concept neighborhoods
24
Bridge connections
94

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Clinical significance · 29 topics
Localization and function · 23 topics
Gene · 18 topics
Overview · 12 topics
Structure · 7 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
CLCN5, CLC5, CLCK2, ClC-5, DENTS, NPHL1, NPHL2, XLRH, XRN, hCIC-K2, chloride voltage-gated channel 5, DENT1
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2J9L, 2JA3
Band
Xp11.23 · X A1.1|X 3.21 cM
Bgee
renal medulla · secondary oocyte · corpus epididymis · human kidney · gonad
BioGPS
More reference expression data
Chr.
X chromosome (human) · X chromosome (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Gene

Structure

Localization and function

Clinical significance

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How CLCN5 connects Entity context

The extracted context around CLCN5 shows recurring relationship patterns in the source. For example, CLCN5 → antiporter activity, apical part of cell, ATP binding, chloride channel activity, chloride ion binding, chloride transmembrane transport, chloride transport, cytosol, early endosome, endosome, endosome membrane, excretion, Golgi apparatus, Golgi membrane, identical protein binding, integral component of membrane, integral component of plasma membrane, ion channel activity, ion transmembrane transport, ion transport Another extracted example is CLCN5 → CLCN1, CLCN2, CLCN3, CLCN4, CLCN6, CLCN7, CLCNKA, CLCNKB, DNA, Five, Gnathostomata, It, Kb, MIM, NH2-terminal, Several, The, The CLCN5, Transcript, Two. Use these groups to spot repeated connection types before inspecting the individual relationships.

CLCN5

Top relations

Gene ontology · 31
CLCN5 → antiporter activity, apical part of cell, ATP binding, chloride channel activity, chloride ion binding, chloride transmembrane transport, chloride transport, cytosol, early endosome, endosome, endosome membrane, excretion, Golgi apparatus, Golgi membrane, identical protein binding, integral component of membrane, integral component of plasma membrane, ion channel activity, ion transmembrane transport, ion transport
related to Gene · 22
CLCN5 → CLCN1, CLCN2, CLCN3, CLCN4, CLCN6, CLCN7, CLCNKA, CLCNKB, DNA, Five, Gnathostomata, It, Kb, MIM, NH2-terminal, Several, The, The CLCN5, Transcript, Two
Bgee · 19
CLCN5 → cartilage tissue, corpus epididymis, cumulus cell, external carotid artery, facial motor nucleus, gonad, human kidney, internal carotid artery, jejunal mucosa, liver, mandibular prominence, migratory enteric neural crest cell, primitive streak, renal medulla, retinal pigment epithelium, secondary oocyte, testicle, yolk sac, zygote
RNA expression pattern · 19
CLCN5 → cartilage tissue, corpus epididymis, cumulus cell, external carotid artery, facial motor nucleus, gonad, human kidney, internal carotid artery, jejunal mucosa, liver, mandibular prominence, migratory enteric neural crest cell, primitive streak, renal medulla, retinal pigment epithelium, secondary oocyte, testicle, yolk sac, zygote
related to Clinical significance · 8
CLCN5 → Alu, Dent, Functional, MIM, The, To, UTR, Xenopus
related to External links · 8
CLCN5 → Human CLCN5, Medicine, Medicine Medical Subject Headings, MeSH, National Library, This, UCSC Genome Browser, United States National Library
Band · 2
CLCN5 → X A1.1|X 3.21 cM, Xp11.23
Chr. · 2
CLCN5 → X chromosome (human), X chromosome (mouse)
End · 2
CLCN5 → 50,099,235 bp, 7,185,597 bp
Aliases · 1
CLCN5 → CLCN5, CLC5, CLCK2, ClC-5, DENTS, NPHL1, NPHL2, XLRH, XRN, hCIC-K2, chloride voltage-gated channel 5, DENT1

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

clc-5 gene disease protein human dent bp kidney proximal tubular chromosome two channel low-molecular-weight chr mutations band cells chloride membrane

CLCN5 relationships Subject–Predicate–Object triples

TTTA extracted 131 structured relationships around CLCN5. Examples in this analysis include CLCN5 → Aliases → CLCN5, CLC5, CLCK2, ClC-5, DENTS, NPHL1, NPHL2, XLRH, XRN, hCIC-K2, chloride voltage-gated channel 5, DENT1 and CLCN5 → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2J9L, 2JA3. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
CLCN5AliasesCLCN5, CLC5, CLCK2, ClC-5, DENTS, NPHL1, NPHL2, XLRH, XRN, hCIC-K2, chloride voltage-gated channel 5, DENT11.00infobox
CLCN5Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2J9L, 2JA31.00infobox
CLCN5BandXp11.231.00infobox
CLCN5BandX A1.1|X 3.21 cM1.00infobox
CLCN5Bgeerenal medulla1.00infobox
CLCN5Bgeesecondary oocyte1.00infobox
CLCN5Bgeecorpus epididymis1.00infobox
CLCN5Bgeehuman kidney1.00infobox
CLCN5Bgeegonad1.00infobox
CLCN5Bgeecartilage tissue1.00infobox
CLCN5Bgeeretinal pigment epithelium1.00infobox
CLCN5Bgeejejunal mucosa1.00infobox
CLCN5Bgeeliver1.00infobox
CLCN5Bgeetesticle1.00infobox
CLCN5Bgeeinternal carotid artery1.00infobox
CLCN5Bgeefacial motor nucleus1.00infobox
CLCN5Bgeemigratory enteric neural crest cell1.00infobox
CLCN5Bgeeexternal carotid artery1.00infobox
CLCN5Bgeezygote1.00infobox
CLCN5Bgeeyolk sac1.00infobox
CLCN5Bgeecumulus cell1.00infobox
CLCN5Bgeeprimitive streak1.00infobox
CLCN5Bgeemandibular prominence1.00infobox
CLCN5BioGPSMore reference expression data1.00infobox
CLCN5Chr.X chromosome (human)1.00infobox
CLCN5Chr.X chromosome (mouse)1.00infobox
CLCN5DatabasesNCBI: entry; OMA: entry1.00infobox
CLCN5End50,099,235 bp1.00infobox
CLCN5End7,185,597 bp1.00infobox
CLCN5EnsemblENSG000001713651.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around CLCN5 bring nearby vocabulary together. In this analysis, examples include Gene, Human and Protein. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • CLCN5
    • Gene
    • Human
    • Protein
    • Location
    • Chloride
    • Channel
    • Mutations
    • External
    • One
    • Chr
    • Chromosome
    • Different
  • clcn5
    • Gene
    • Human
    • Protein
    • Location
    • Chloride
    • Channel
    • Mutations
    • External
    • One
    • Chr
    • Chromosome
    • Different
  • gene
    • Location
    • Human
    • Chr
    • Chromosome
    • Bp
    • External
    • Protein
    • Band
    • One
    • Chloride
    • Function
    • Channel
  • chloride channel
    • Chloride
    • External
    • Human
    • Location
    • Transport
    • Chr
    • Chromosome
    • Expressed
    • Function
    • Membrane
    • Bp
    • Kidney
  • kidney
    • Tubular
    • Nephrocalcinosis
    • Hypercalciuria
    • Proteins
    • Low-molecular-weight
    • Human
    • Proximal
    • External
    • Band
    • Endosome
    • Expression
    • Location
  • gene transcripts
    • Location
    • Human
    • Chr
    • Chromosome
    • Bp
    • External
    • Protein
    • Band
    • One
    • Chloride
    • Function
    • Channel
  • localization and function
    • External
    • Location
    • Chr
    • Chromosome
    • Bp
    • Human
    • Clc-5
    • Protein
    • Gene
    • Band
    • Endosome
    • Expression
  • chromosome
    • Bp
    • Band
    • Human
    • Location
    • External
    • Function
    • Gene
    • Clcn5
    • Endosome
    • Expression
    • Genetic
    • Models

Connections between topic areas Semantic bridges

For CLCN5, one of the stronger structural bridges in this analysis connects CLCN5 with Clinical significance. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
CLCN5Clinical significance · splits 65 ⟂ 30
CLCN5Localization and function · splits 71 ⟂ 24
CLCN5Gene · splits 76 ⟂ 19
CLCN5Overview · splits 82 ⟂ 13
CLCN5Structure · splits 87 ⟂ 8

Map overview Semantic statistics

CLCN5

Nodes95
Edges94
Triples131
Avg. degree1.98
Density0.021053
Components1

Source & methodology

TTTA analyzes the structure around CLCN5 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Localization and function, Clinical significance & Gene, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — CLCN5 · EN edition · Analysis: TopicsToTalkAbout

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