AAA proteins

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AAA proteins topic overview

The analysis highlights Human proteins containing this domain, Overview and Functions as prominent areas in the source structure around AAA proteins.

Related topics: 98
Source areas: 7
Connected nodes: 105
Extracted relationships: 77
Concept neighborhoods: 25
Bridge connections: 105

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Human proteins containing this domain · 53 topics

Overview · 22 topics

Functions · 9 topics

Structure · 8 topics

Prokaryotic AAAs · 4 topics

Molecular mechanism · 1 topics

Quaternary structure · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

AlphaFold: IPR003959 · PF00004
Available protein structures:: IPR003959 · PF00004
CDD: cd00009
ECOD: 2004.1.1
InterPro: IPR003959
Membranome: 74

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Functions

Human proteins containing this domain

AFG3L2
ATAD1 ATAD1?action=edit&redlink=1
ATAD2 ATAD2?action=edit&redlink=1
ATAD2B ATAD2B?action=edit&redlink=1
ATAD3A ATAD3A?action=edit&redlink=1
ATAD3B
ATAD3C ATAD3C?action=edit&redlink=1
ATAD5 ATAD5?action=edit&redlink=1
BCS1L
CHTF18
CLBP CLBP?action=edit&redlink=1
CLPP ATP-dependent Clp protease proteolytic subunit
CLPX CLPX?action=edit&redlink=1
FIGN FIGN?action=edit&redlink=1
FIGNL1 FIGNL1?action=edit&redlink=1
FIGNL2
IQCA1 IQCA1?action=edit&redlink=1
KATNA1
KATNAL1 KATNAL1?action=edit&redlink=1
KATNAL2 KATNAL2?action=edit&redlink=1
LONP1
LONP2
MDN1
NSF N-ethylmaleimide sensitive fusion protein
NVL NVL (gene)
ORC1
ORC4
PEX1
PEX6
PSMC1
PSMC2
PSMC3
PSMC4
PSMC5
PSMC6
RFC1
RFC2
RFC3
RFC4
RFC5
RUVBL1
RUVBL2
SPAST
SPATA5
SPATA5L1 SPATA5L1?action=edit&redlink=1
SPG7
TRIP13
VPS4A
VPS4B
WRNIP1
YME1L1
AK6 AK6?action=edit&redlink=1
CDC6

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How AAA proteins connects Entity context

The extracted context around AAA proteins shows recurring relationship patterns in the source. For example, AAA proteins → AAA, ATPase, Cdc48p, Dyneins, E3, ER, ER-associated, ER-based E2, ERAD, Misfolded, Nonfunctional, On, Substrate, The AAA-type ATPase Cdc48p/p97, Ufd1p/Npl4p Another extracted example is AAA proteins → AAA, ATPase, Cdc48/p97, D1, D2, In, N-terminal, Pex1p, Pex6p, Sec18p/NSF, Some, While. Use these groups to spot repeated connection types before inspecting the individual relationships.

Top relations

related to Molecular motion · 15

AAA proteins → AAA, ATPase, Cdc48p, Dyneins, E3, ER, ER-associated, ER-based E2, ERAD, Misfolded, Nonfunctional, On, Substrate, The AAA-type ATPase Cdc48p/p97, Ufd1p/Npl4p

related to Classification · 12

AAA proteins → AAA, ATPase, Cdc48/p97, D1, D2, In, N-terminal, Pex1p, Pex6p, Sec18p/NSF, Some, While

related to Prokaryotic AAAs · 11

AAA proteins → AAA, AAAs, ADP-bound, C-terminal, ClpAPS, ClpX/ClpY, HSP100, In HslU, Prokaryotes, The, Thereby

related to Structure · 10

AAA proteins → AAA, C-terminal, Most AAA, N-terminal, P-loop NTPases, Rossmann, The AAA, The N-terminal, These, Walker

related to Evolutionary relationships · 5

AAA proteins → AAA, H2-insert, HCLR, III, PS-II

AlphaFold · 2

AAA proteins → IPR003959, PF00004

Available protein structures: · 2

AAA proteins → IPR003959, PF00004

related to Functions · 2

AAA proteins → AAA, DNA

CDD · 1

AAA proteins → cd00009

ECOD · 1

AAA proteins → 2004.1.1

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

aaa proteins protein substrate family domains atpase degradation activity structure atp hydrolysis membrane domain p97 cdc48p conserved diverse proteasome n-terminal

AAA proteins relationships Subject–Predicate–Object triples

TTTA extracted 77 structured relationships around AAA proteins. Examples in this analysis include AAA proteins → AlphaFold → IPR003959 and AAA proteins → AlphaFold → PF00004. The table shows each extracted connection, where it came from and its confidence.

Subject	Predicate	Object	Confidence	Src
AAA proteins	AlphaFold	IPR003959	1.00	infobox
AAA proteins	AlphaFold	PF00004	1.00	infobox
AAA proteins	Available protein structures:	IPR003959	1.00	infobox
AAA proteins	Available protein structures:	PF00004	1.00	infobox
AAA proteins	CDD	cd00009	1.00	infobox
AAA proteins	ECOD	2004.1.1	1.00	infobox
AAA proteins	InterPro	IPR003959	1.00	infobox
AAA proteins	Membranome	74	1.00	infobox
AAA proteins	PDB	IPR003959 PF00004 (ECOD; PDBsum)	1.00	infobox
AAA proteins	Pfam	PF00004	1.00	infobox
AAA proteins	Pfam clan	CL0023	1.00	infobox
AAA proteins	PROSITE	PDOC00572	1.00	infobox
AAA proteins	SCOP2	1nsf / SCOPe / SUPFAM	1.00	infobox
AAA proteins	Symbol	AAA	1.00	infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around AAA proteins bring nearby vocabulary together. In this analysis, examples include Proteins, Family and Protein. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

AAA proteins
- Proteins
- Family
- Protein
- Domains
- Molecular
- Atpases
- C-terminal
- N-terminal
- Structure
- Activity
- Atp
- Domain
aaa proteins
- Proteins
- Family
- Protein
- Domains
- Substrate
- Molecular
- Atpases
- C-terminal
- N-terminal
- Structure
- Activity
- Atp
protein family
- Large
- Ntpases
- P-loop
- Activity
- Degradation
- Functions
- Superfamily
- Domain
- Dna
- Proteins
- Cdc48p
- P97
protein superfamily
- Ntpases
- P-loop
- Activity
- Degradation
- Family
- Functionally
- Large
- Diverse
- Dna
- N-terminal
- Proteins
- Cdc48p
protein degradation
- Proteasome
- Microtubule
- Activity
- Degradation
- Protein
- Dna
- Involved
- Membrane
- Proteins
- Cdc48p
- P97
- Atpase
protein aggregates
- Activity
- Degradation
- Dna
- Proteins
- Cdc48p
- P97
- Atpase
- Domains
- Substrate
- Microtubule
- Regulation
- Involved
motor protein
- Activity
- Degradation
- Dna
- Proteins
- Cdc48p
- P97
- Atpase
- Domains
- Substrate
- Microtubule
- Regulation
- Involved
human proteins containing this domain
- N-terminal
- Domains
- Family
- Atpase
- Substrate
- Molecular
- Mechanism
- Ntpases
- P-loop
- Structure
- Domain
- Membrane

Connections between topic areas Semantic bridges

For AAA proteins, one of the stronger structural bridges in this analysis connects AAA proteins with Human proteins containing this domain. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3

AAA proteins — Human proteins containing this domain · splits 52 ⟂ 54

AAA proteins — Overview · splits 83 ⟂ 23

AAA proteins — Functions · splits 96 ⟂ 10

AAA proteins — Structure · splits 97 ⟂ 9

AAA proteins — Prokaryotic AAAs · splits 101 ⟂ 5

Map overview Semantic statistics

AAA proteins

Nodes106

Edges105

Triples77

Avg. degree1.98

Density0.018868

Components1

Source & methodology

TTTA analyzes the structure around AAA proteins to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Human proteins containing this domain, Overview & Functions, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — AAA proteins · EN edition · Analysis: TopicsToTalkAbout