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TOP1

DNA topoisomerase 1 is an enzyme that in humans is encoded by the TOP1 gene. It is a DNA topoisomerase, an enzyme that catalyzes the transient breaking and rejoining of a single strand of DNA.

Standards, Cancer & Mechanism

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5.6.2.1
Aliases
TOP1, TOPI, topoisomerase (DNA) I, DNA topoisomerase I
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1A31, 1A35, 1A36, 1EJ9, 1K4S, 1K4T, 1LPQ, 1NH3, 1R49, 1RR8, 1RRJ, 1SC7, 1SEU, 1T8I, 1TL8
Band
20q12 · 2 H2|2 80.96 cM
Bgee
oocyte · ventricular zone · ganglionic eminence · secondary oocyte · pericardium
BioGPS
n/a

Topics to explore

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Overview

Mechanism

Inhibition

Cancer

DNA repair

Interactions

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Map overview Semantic statistics

TOP1

Nodes51
Edges50
Triples133
Avg. degree1.96
Density0.039216
Components1

How this topic connects Entity context

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TOP1

Top relations

Gene ontology · 40
TOP1 → ATP binding, chromatin binding, chromatin remodeling, chromosome, chromosome segregation, circadian regulation of gene expression, circadian rhythm, core promoter sequence-specific DNA binding, cytoplasm, DNA binding, DNA replication, DNA topoisomerase activity, DNA topoisomerase type I (single strand cut, ATP-independent) activity, DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex, DNA topological change, double-stranded DNA binding, embryonic cleavage, fibrillar center, isomerase activity, nuclear chromosome
Bgee · 17
TOP1 → ganglionic eminence, genital tubercle, human fetus, Ileal epithelium, mandibular prominence, maxillary prominence, monocyte, oocyte, pancreatic ductal cell, pericardium, pylorus, secondary oocyte, superior surface of tongue, tail of embryo, vena cava, ventricular zone, zygote
RNA expression pattern · 17
TOP1 → ganglionic eminence, genital tubercle, human fetus, Ileal epithelium, mandibular prominence, maxillary prominence, monocyte, oocyte, pancreatic ductal cell, pericardium, pylorus, secondary oocyte, superior surface of tongue, tail of embryo, vena cava, ventricular zone, zygote
related to Inhibition · 12
TOP1 → Camptotheca, Camptothecin, Chinese, DNA, Irinotecan, One, SN-38, The, The TOP1cc, TOP1-DNA, TOP1cc, Topoisomerase
related to Mechanism · 8
TOP1 → A/T, As, Champoux, DNA, G/C, IB, T-3, The
related to Cancer · 5
TOP1 → Camptothecin, FDA-approved, Higher, KRAS, Since
related to Interactions · 5
TOP1 → ASF/SF2, BTBD1, BTBD2, Nucleolin, P53
related to Synthetic lethality · 4
TOP1 → DNA, Irinotecan, Synthetic, The
Band · 2
TOP1 → 2 H2|2 80.96 cM, 20q12
Chr. · 2
TOP1 → Chromosome 2 (mouse), Chromosome 20 (human)

Important terminology Word statistics

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Important terminology

dna irinotecan gene topoisomerase enzyme expression repair strand human bp chromosome 20 cancer chr band patients end synthetic lethality domain

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
TOP15.6.2.11.00infobox
TOP1AliasesTOP1, TOPI, topoisomerase (DNA) I, DNA topoisomerase I1.00infobox
TOP1Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1A31, 1A35, 1A36, 1EJ9, 1K4S, 1K4T, 1LPQ, 1NH3, 1R49, 1RR8, 1RRJ, 1SC7, 1SEU, 1T8I, 1TL81.00infobox
TOP1Band20q121.00infobox
TOP1Band2 H2|2 80.96 cM1.00infobox
TOP1Bgeeoocyte1.00infobox
TOP1Bgeeventricular zone1.00infobox
TOP1Bgeeganglionic eminence1.00infobox
TOP1Bgeesecondary oocyte1.00infobox
TOP1Bgeepericardium1.00infobox
TOP1Bgeepylorus1.00infobox
TOP1Bgeevena cava1.00infobox
TOP1Bgeepancreatic ductal cell1.00infobox
TOP1Bgeesuperior surface of tongue1.00infobox
TOP1Bgeemonocyte1.00infobox
TOP1BgeeIleal epithelium1.00infobox
TOP1Bgeezygote1.00infobox
TOP1Bgeemaxillary prominence1.00infobox
TOP1Bgeemandibular prominence1.00infobox
TOP1Bgeetail of embryo1.00infobox
TOP1Bgeehuman fetus1.00infobox
TOP1Bgeegenital tubercle1.00infobox
TOP1BioGPSn/a1.00infobox
TOP1Chr.Chromosome 20 (human)1.00infobox
TOP1Chr.Chromosome 2 (mouse)1.00infobox
TOP1DatabasesNCBI: entry; OMA: entry1.00infobox
TOP1End41,124,487 bp1.00infobox
TOP1End160,564,684 bp1.00infobox
TOP1EnsemblENSG000001989001.00infobox
TOP1Entrez71501.00infobox

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