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TOP1: Standards, Cancer & Mechanism

DNA topoisomerase 1 is an enzyme that in humans is encoded by the TOP1 gene. It is a DNA topoisomerase, an enzyme that catalyzes the transient breaking and rejoining of a single strand of DNA.

Language: English [EN]
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TOP1 topic overview

The analysis highlights Standards, Cancer and Mechanism as prominent areas in the source structure around TOP1.

Related topics
44
Source areas
6
Connected nodes
50
Extracted relationships
133
Concept neighborhoods
17
Bridge connections
50

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Cancer · 15 topics
Mechanism · 11 topics
Interactions · 7 topics
Inhibition · 5 topics
Overview · 4 topics
DNA repair · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

5.6.2.1
Aliases
TOP1, TOPI, topoisomerase (DNA) I, DNA topoisomerase I
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1A31, 1A35, 1A36, 1EJ9, 1K4S, 1K4T, 1LPQ, 1NH3, 1R49, 1RR8, 1RRJ, 1SC7, 1SEU, 1T8I, 1TL8
Band
20q12 · 2 H2|2 80.96 cM
Bgee
oocyte · ventricular zone · ganglionic eminence · secondary oocyte · pericardium
BioGPS
n/a

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Mechanism

Inhibition

Cancer

DNA repair

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How TOP1 connects Entity context

The extracted context around TOP1 shows recurring relationship patterns in the source. For example, TOP1 → ATP binding, chromatin binding, chromatin remodeling, chromosome, chromosome segregation, circadian regulation of gene expression, circadian rhythm, core promoter sequence-specific DNA binding, cytoplasm, DNA binding, DNA replication, DNA topoisomerase activity, DNA topoisomerase type I (single strand cut, ATP-independent) activity, DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex, DNA topological change, double-stranded DNA binding, embryonic cleavage, fibrillar center, isomerase activity, nuclear chromosome Another extracted example is TOP1 → ganglionic eminence, genital tubercle, human fetus, Ileal epithelium, mandibular prominence, maxillary prominence, monocyte, oocyte, pancreatic ductal cell, pericardium, pylorus, secondary oocyte, superior surface of tongue, tail of embryo, vena cava, ventricular zone, zygote. Use these groups to spot repeated connection types before inspecting the individual relationships.

TOP1

Top relations

Gene ontology · 40
TOP1 → ATP binding, chromatin binding, chromatin remodeling, chromosome, chromosome segregation, circadian regulation of gene expression, circadian rhythm, core promoter sequence-specific DNA binding, cytoplasm, DNA binding, DNA replication, DNA topoisomerase activity, DNA topoisomerase type I (single strand cut, ATP-independent) activity, DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex, DNA topological change, double-stranded DNA binding, embryonic cleavage, fibrillar center, isomerase activity, nuclear chromosome
Bgee · 17
TOP1 → ganglionic eminence, genital tubercle, human fetus, Ileal epithelium, mandibular prominence, maxillary prominence, monocyte, oocyte, pancreatic ductal cell, pericardium, pylorus, secondary oocyte, superior surface of tongue, tail of embryo, vena cava, ventricular zone, zygote
RNA expression pattern · 17
TOP1 → ganglionic eminence, genital tubercle, human fetus, Ileal epithelium, mandibular prominence, maxillary prominence, monocyte, oocyte, pancreatic ductal cell, pericardium, pylorus, secondary oocyte, superior surface of tongue, tail of embryo, vena cava, ventricular zone, zygote
related to Inhibition · 12
TOP1 → Camptotheca, Camptothecin, Chinese, DNA, Irinotecan, One, SN-38, The, The TOP1cc, TOP1-DNA, TOP1cc, Topoisomerase
related to Mechanism · 8
TOP1 → A/T, As, Champoux, DNA, G/C, IB, T-3, The
related to Cancer · 5
TOP1 → Camptothecin, FDA-approved, Higher, KRAS, Since
related to Interactions · 5
TOP1 → ASF/SF2, BTBD1, BTBD2, Nucleolin, P53
related to Synthetic lethality · 4
TOP1 → DNA, Irinotecan, Synthetic, The
Band · 2
TOP1 → 2 H2|2 80.96 cM, 20q12
Chr. · 2
TOP1 → Chromosome 2 (mouse), Chromosome 20 (human)

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

dna irinotecan gene topoisomerase enzyme expression repair strand human bp chromosome 20 cancer chr band patients end synthetic lethality domain

TOP1 relationships Subject–Predicate–Object triples

TTTA extracted 133 structured relationships around TOP1. Examples in this analysis include TOP1 → 5.6.2.1 → ↗ and TOP1 → Aliases → TOP1, TOPI, topoisomerase (DNA) I, DNA topoisomerase I. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
TOP15.6.2.11.00infobox
TOP1AliasesTOP1, TOPI, topoisomerase (DNA) I, DNA topoisomerase I1.00infobox
TOP1Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1A31, 1A35, 1A36, 1EJ9, 1K4S, 1K4T, 1LPQ, 1NH3, 1R49, 1RR8, 1RRJ, 1SC7, 1SEU, 1T8I, 1TL81.00infobox
TOP1Band20q121.00infobox
TOP1Band2 H2|2 80.96 cM1.00infobox
TOP1Bgeeoocyte1.00infobox
TOP1Bgeeventricular zone1.00infobox
TOP1Bgeeganglionic eminence1.00infobox
TOP1Bgeesecondary oocyte1.00infobox
TOP1Bgeepericardium1.00infobox
TOP1Bgeepylorus1.00infobox
TOP1Bgeevena cava1.00infobox
TOP1Bgeepancreatic ductal cell1.00infobox
TOP1Bgeesuperior surface of tongue1.00infobox
TOP1Bgeemonocyte1.00infobox
TOP1BgeeIleal epithelium1.00infobox
TOP1Bgeezygote1.00infobox
TOP1Bgeemaxillary prominence1.00infobox
TOP1Bgeemandibular prominence1.00infobox
TOP1Bgeetail of embryo1.00infobox
TOP1Bgeehuman fetus1.00infobox
TOP1Bgeegenital tubercle1.00infobox
TOP1BioGPSn/a1.00infobox
TOP1Chr.Chromosome 20 (human)1.00infobox
TOP1Chr.Chromosome 2 (mouse)1.00infobox
TOP1DatabasesNCBI: entry; OMA: entry1.00infobox
TOP1End41,124,487 bp1.00infobox
TOP1End160,564,684 bp1.00infobox
TOP1EnsemblENSG000001989001.00infobox
TOP1Entrez71501.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around TOP1 bring nearby vocabulary together. In this analysis, examples include Irinotecan, Expression and Inactivation. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • TOP1
    • Irinotecan
    • Expression
    • Inactivation
    • End
    • Gene
    • Lethality
    • Synthetic
    • Cancer
    • Strand
    • Topoisomerase
    • Repair
    • Lethal
  • top1
    • Irinotecan
    • Expression
    • Inactivation
    • End
    • Gene
    • Lethality
    • Synthetic
    • Cancer
    • Strand
    • Topoisomerase
    • Repair
    • Lethal
  • enzyme
    • Single
    • Strand
    • Topoisomerase
    • Gene
    • Activity
    • Location
    • Cleavage
    • Bp
    • Chr
    • Chromosome
    • Human
    • Top1
  • gene
    • Repair
    • Chromosome
    • Expression
    • Location
    • Hypermethylated
    • Lethal
    • Synthetically
    • Wrn
    • Bp
    • Chr
    • Human
    • Cancer
  • dna topoisomerase
    • Repair
    • Enzyme
    • Dna
    • Topoisomerase
    • Gene
    • Human
    • Top1
    • Strand
    • Activity
    • Location
    • Single
    • Bp
  • dna
    • Repair
    • Topoisomerase
    • Gene
    • Top1
    • Enzyme
    • Strand
    • Single
    • End
    • Irinotecan
    • Expression
    • Cleavage
    • Lethal
  • cancer
    • Patients
    • Repair
    • Study
    • Expression
    • Inactivation
    • Lethality
    • Synthetic
    • Gene
    • Top1
    • Dna
    • Activity
    • Location
  • dna repair
    • Repair
    • Topoisomerase
    • Gene
    • Lethal
    • Synthetically
    • Inactivation
    • Top1
    • Enzyme
    • Strand
    • Irinotecan
    • Single
    • Expression

Connections between topic areas Semantic bridges

For TOP1, one of the stronger structural bridges in this analysis connects TOP1 with Cancer. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
TOP1Cancer · splits 35 ⟂ 16
TOP1Mechanism · splits 39 ⟂ 12
TOP1Interactions · splits 43 ⟂ 8
TOP1Inhibition · splits 45 ⟂ 6
TOP1Overview · splits 46 ⟂ 5
TOP1DNA repair · splits 48 ⟂ 3

Map overview Semantic statistics

TOP1

Nodes51
Edges50
Triples133
Avg. degree1.96
Density0.039216
Components1

Source & methodology

TTTA analyzes the structure around TOP1 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Standards, Cancer & Mechanism, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — TOP1 · EN edition · Analysis: TopicsToTalkAbout

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