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UGENE: Works, Key features & Supported biological data formats

UGENE is computer software for bioinformatics. It helps biologists to analyze various biological genetics data, such as sequences, annotations, multiple alignments, phylogenetic trees, NGS assemblies, and others. UGENE integrates dozens of well-known biological tools, algorithms, and original tools in the context of genomics, evolutionary biology…

Language: English [EN]
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UGENE topic overview

The analysis highlights Works, Key features and Supported biological data formats as prominent areas in the source structure around UGENE.

Related topics
86
Source areas
7
Connected nodes
93
Extracted relationships
95
Concept neighborhoods
32
Bridge connections
93

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Key features · 47 topics
Overview · 22 topics
Supported biological data formats · 11 topics
Alignment Editor · 2 topics
Release cycle · 2 topics
Sequence View · 1 topics
Workflow Designer · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Available in
English, Russian
Developer
Unipro
License
GPLv2
Operating system
Windows, macOS, Linux
Original author
Fursov M.
Release
2008; 18 years ago (2008)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Key features

Sequence View

Alignment Editor

Workflow Designer

Supported biological data formats

Release cycle

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How UGENE connects Entity context

The extracted context around UGENE shows recurring relationship patterns in the source. For example, UGENE → BAM, Biotechnology Information, Bowtie, BWA, CAP33D, CEAS, ChIP-seq, Cistrome, Clustal, Create, Cufflinks, DAS, DNA, ExpertDiscoverySearch, GOR IV, Kalign, MACS, MAFFT, MMDB, Molecular Modeling Database Another extracted example is UGENE → ACE, BAM, Before, Challenge, Illumina, It, SAM, The, The Assembly Browser, This. Use these groups to spot repeated connection types before inspecting the individual relationships.

UGENE

Top relations

related to Key features · 49
UGENE → BAM, Biotechnology Information, Bowtie, BWA, CAP33D, CEAS, ChIP-seq, Cistrome, Clustal, Create, Cufflinks, DAS, DNA, ExpertDiscoverySearch, GOR IV, Kalign, MACS, MAFFT, MMDB, Molecular Modeling Database
related to Assembly Browser · 10
UGENE → ACE, BAM, Before, Challenge, Illumina, It, SAM, The, The Assembly Browser, This
related to External links · 8
UGENE → Archived, Linux, Linux Format, Official, UniProUGENE, Wayback Machine, Wayback MachineUGENE, Wayback MachineЛучший
related to Release cycle · 7
UGENE → Akademgorodok, Development, Each, Novosibirsk, Russia, The, Unipro LLC
related to Workflow Designer · 4
UGENE → It, The, UGENE Workflow Designer, Workflow Designer
Available in · 1
UGENE → English, Russian
Developer · 1
UGENE → Unipro
License · 1
UGENE → GPLv2
Operating system · 1
UGENE → Windows, macOS, Linux
Original author · 1
UGENE → Fursov M.

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

workflow data designer sequences workflows algorithms tools phylogenetic allows computer bioinformatics sequence alignment also formats software biological multiple analyze ngs

UGENE relationships Subject–Predicate–Object triples

TTTA extracted 95 structured relationships around UGENE. Examples in this analysis include UGENE → Available in → English, Russian and UGENE → Developer → Unipro. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
UGENEAvailable inEnglish, Russian1.00infobox
UGENEDeveloperUnipro1.00infobox
UGENELicenseGPLv21.00infobox
UGENEOperating systemWindows, macOS, Linux1.00infobox
UGENEOriginal authorFursov M.1.00infobox
UGENERelease2008; 18 years ago (2008)1.00infobox
UGENEStable release52.0 / 22 January 2025; 19 months ago (2025-01-22)1.00infobox
UGENETypeBioinformatics toolkit1.00infobox
UGENEWebsiteugene.net1.00infobox
UGENEWritten inC++, Qt1.00infobox
Windowsinstance ofand other branches of life science.UGENE works on personal computer operating systems0.80text
macOSinstance ofand other branches of life science.UGENE works on personal computer operating systems0.80text

Related concept clusters Concept neighborhoods

The concept neighborhoods around UGENE bring nearby vocabulary together. In this analysis, examples include Alignment, Sequence and Designer. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • software
    • Bioinformatics
    • Alignment
    • Sequence
    • Ugene
    • Annotate
    • Features
    • Linux
    • Storage
    • Version
    • Analyze
    • Browser
    • Ngs
  • free and open-source software
    • Bioinformatics
    • Alignment
    • Sequence
    • Ugene
    • Annotate
    • Features
    • Linux
    • Storage
    • Version
    • Analyze
    • Browser
    • Ngs
  • multiple sequence alignment
    • Sequence
    • Sequences
    • Alignment
    • Multiple
    • Phylogenetic
    • Trees
    • Tree
    • Formats
    • Features
    • Ngs
    • Browser
    • Software
  • protein data bank
    • Ngs
    • Annotate
    • Storage
    • Workflow
    • Assembly
    • Formats
    • Sequences
    • Phylogenetic
    • Designer
    • Features
    • Helps
    • Browser
  • ugene query designer
    • Workflow
    • Using
    • Formats
    • Workflows
    • Alignment
    • Annotate
    • Features
    • Sequence
    • Designer
    • Ugene
    • Browser
    • Ngs
  • sequence alignment
    • Sequence
    • Multiple
    • Phylogenetic
    • Tree
    • Formats
    • Sequences
    • Features
    • Browser
    • Software
    • Trees
    • Ugene
    • Assembly
  • workflows
    • Annotate
    • Designer
    • Analyze
    • Ngs
    • Formats
    • Sequences
    • Workflow
    • Data
    • Available
    • Features
    • Storage
    • Bioinformatics
  • alignment editor
    • Sequence
    • Multiple
    • Phylogenetic
    • Tree
    • Formats
    • Sequences
    • Features
    • Browser
    • Software
    • Trees
    • Ugene
    • Assembly

Connections between topic areas Semantic bridges

For UGENE, one of the stronger structural bridges in this analysis connects UGENE with Key features. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
UGENE — Key features · splits 46 ⟂ 48
UGENE — Overview · splits 71 ⟂ 23
UGENE — Supported biological data formats · splits 82 ⟂ 12
UGENE — Alignment Editor · splits 91 ⟂ 3
UGENE — Release cycle · splits 91 ⟂ 3

Map overview Semantic statistics

UGENE

Nodes94
Edges93
Triples95
Avg. degree1.98
Density0.021277
Components1

Source & methodology

TTTA analyzes the structure around UGENE to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Works, Key features & Supported biological data formats, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — UGENE · EN edition · Analysis: TopicsToTalkAbout

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