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Transcriptome

The transcriptome is the set of all RNA molecules (transcripts) in a cell or a population of cells. It includes all of the functional RNA molecules and all other transcripts that may arise by spurious transcription or transcription of non-functional regions such as pseudogenes or virus fragments. A major goal of modern molecular biology is to determine…

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Applications

Protein-codingBrainTestesLymphatic systemEndometrium
30 related topics

Methods of construction

Expressed sequence tagsTranscriptomics techniquesDNA microarraysRNA-SeqRNA extraction
23 related topics

Relation to other ome fields

-omeMultiomicsMetabolomicsMetaboliteExome
21 related topics

Etymology and history

PortmanteauNeologismsCDNASilk mothS. cerevisiae
10 related topics

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Overview

Etymology and history

Transcription

Types of RNA transcripts

Scope of study

Methods of construction

Analysis

Applications

Relation to other ome fields

Transcriptome databases

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Map overview Semantic statistics

Transcriptome

Nodes129
Edges128
Triples119
Avg. degree1.98
Density0.015504
Components1

How this topic connects Entity context

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Transcriptome

Top relations

related to Single-cell transcriptomics · 13
Transcriptome → Additionally, Although, Another, ESCs, Newer, RNA, RNAseq, Single-cell, Single-cell RNA, The, This, Transcription, With
related to history · 11
Transcriptome → As, Attempts, CAGE, DNA, During, It, MPSS, SAGE, The, This, With
related to RNA sequencing · 11
Transcriptome → DNA, It, RIN, RNA, RNA Integrity Number, RNAs, Since, The, The RNA, This, UV
related to Types of RNA transcripts · 10
Transcriptome → Almost, DNA, Genes, In, Many, Nevertheless, Others, See Enhancer RNA, Some, The
has method · 9
Transcriptome → Both, Currently, DNA, Initially, RNA, RNA-Seq, SAGE, To, Transcriptomics
related to Relation to other ome fields · 9
Transcriptome → Additionally, As, It, RNA, RNAs, Similar, The, There, This
related to Scope of study · 9
Transcriptome → Additionally, In, RNA, RNAs, See Gene, Several, The, These, UTRs
related to Humans · 7
Transcriptome → In, Mammals The, RNA, RNA-seq, The, This, Transcriptomic
related to Transcription · 7
Transcriptome → DNA, In, RNA, RNAs, The, This, Transcription
related to DNA microarrays · 5
Transcriptome → DNA, Microarrays, The, The RNA, When

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Important terminology

rna gene transcripts genes expression genome cell dna transcription used transcriptomics analysis functional also mrna known process cdna using sequencing

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Transcriptomeis aset of all RNA molecules0.90text
Transcriptomeis aportmanteau of the words transcript and genome0.90text
pseudogenes or virus fragmentsinstance ofIt includes all of the functional RNA molecules and all other transcripts that may arise by spurious transcription or transcription of non-functional regions0.80text
serial analysis of gene expressioninstance ofThis was followed by techniques0.80text
transcriptional attenuationinstance ofwith the exception of mRNA degradation phenomena0.80text
tRNAsinstance ofbut sometimes including others0.80text
sRNAsinstance ofbut sometimes including others0.80text
DNA or technical contaminants related to sample processinginstance ofwith the purpose of avoiding contaminants0.80text
circulating tumor cellsinstance ofSingle-cell transcriptomic techniques have been used to characterize rare cell populations0.80text
cancer stem cells in solid tumorsinstance ofSingle-cell transcriptomic techniques have been used to characterize rare cell populations0.80text
and embryonic stem cellsinstance ofSingle-cell transcriptomic techniques have been used to characterize rare cell populations0.80text
Transcriptomehas methodTranscriptomics0.60section

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