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Proteogenomics

Proteogenomics is a field of biological research that utilizes a combination of proteomics, genomics, and transcriptomics to aid in the discovery and identification of peptides. Proteogenomics is used to identify new peptides by comparing MS/MS spectra against a protein database that has been derived from genomic and transcriptomic information.…

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Map overview Semantic statistics

Proteogenomics

Nodes44
Edges43
Triples42
Avg. degree1.95
Density0.045455
Components1

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Proteogenomics

Top relations

has application · 12
Proteogenomics → Besides, Cancer, Escherichia, For, Gene, In, Mycobacterium, N-terminal, One, Research, Shewanella, The
related to Challenges · 8
Proteogenomics → Another, Despite, False, For, MS/MS, Next, One, There
related to history · 8
Proteogenomics → By, Eng, George Church's, However, In, The, This, Yates
has method · 5
Proteogenomics → Also, Another, Comparative, Protein, RNA
is a · 2
Proteogenomics → field of biological research that utilizes a combination of proteomics, sheer size of protein databases generated. statistically

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Important terminology

protein data database gene proteomics databases identification sequences proteins peptide peptides genetic cancer genomic mutations proteogenomic generated mass annotations studies

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Proteogenomicsis afield of biological research that utilizes a combination of proteomics0.90text
Proteogenomicsis asheer size of protein databases generated. statistically0.90text
the Proteomics Identifications Databaseinstance ofproteomics relies on the assumption that current gene models are correct and that all relevant protein sequences can be found in a reference database0.80text
CITE-Seqinstance ofthe joint profiling of surface proteins and mRNA transcripts from single cells by methods0.80text
ESCAPE has been referred to as single-cell proteogenomicsinstance ofthe joint profiling of surface proteins and mRNA transcripts from single cells by methods0.80text
although the goals of these studies are not related to peptide identificationinstance ofthe joint profiling of surface proteins and mRNA transcripts from single cells by methods0.80text
methylationinstance ofCancer occurs through genetic mutations0.80text
translocationinstance ofCancer occurs through genetic mutations0.80text
and somatic mutationsinstance ofCancer occurs through genetic mutations0.80text
Proteogenomicshas applicationOne0.60section
Proteogenomicshas applicationGene0.60section
Proteogenomicshas applicationFor0.60section

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