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CITE-Seq

CITE-Seq (Cellular Indexing of Transcriptomes and Epitopes by Sequencing) is a method for performing RNA sequencing along with gaining quantitative and qualitative information on surface proteins with available antibodies on a single cell level. So far, the method has been demonstrated to work with only a few proteins per cell. As such, it provides an…

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Workflow

Wet labCDNADry labAntibody-oligonucleotide conjugatesDrop-seq
8 related topics

Alternative methods

Protein SequencingStreptavidinMass cytometry
3 related topics

Adaptations of the technique

CRISPRSnRNA-seq
2 related topics

Advantages and Limitations of CITE-seq

RNA interference
1 related topics

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Overview

Workflow

Adaptations of the technique

Advantages and Limitations of CITE-seq

Alternative methods

Advanced semantic analysis

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Map overview Semantic statistics

CITE-Seq

Nodes25
Edges24
Triples56
Avg. degree1.92
Density0.08
Components1

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CITE-Seq

Top relations

related to Advantages and Limitations of CITE-seq · 17
CITE-Seq → Advantages, Coupling, CRISPR, Drop-seq, Due, Genomics, In, It, Lastly, Limitations, Moreover, One, Previous, RNA, Seq, These, With
related to Adaptations of the technique · 12
CITE-Seq → ADTs, Cell, Cell Hashing, CRISPR, Gaublomme, In, It, New York Genome Center, RNA-seq, Sequencing, The, This
has method · 11
CITE-Seq → DNA, In, Merck, Peterson, PLAYR, Protein Sequencing, Proximal Ligation Assay, REAP-seq, RNA, RNA Expression, While REAP-seq
has application · 7
CITE-Seq → All, Another, Concurrent, For, It, RNA, T-cells
related to Dry lab workflow · 6
CITE-Seq → Analysis, Due, Finally, Firstly, Seq, The
related to Workflow · 2
CITE-Seq → RNA, The
is a · 1
CITE-Seq → loss of location information

Important terminology Word statistics

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Important terminology

cell sequencing single scrna-seq cells proteins method data rna protein also analysis sample hashing information cdna technique methods adt antibodies

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
CITE-Seqis aloss of location information0.90text
CITE-Seqhas applicationConcurrent0.60section
CITE-Seqhas applicationFor0.60section
CITE-Seqhas applicationIt0.60section
CITE-Seqhas applicationAll0.60section
CITE-Seqhas applicationRNA0.60section
CITE-Seqhas applicationT-cells0.60section
CITE-Seqhas applicationAnother0.60section
CITE-Seqhas methodREAP-seq0.60section
CITE-Seqhas methodPeterson0.60section
CITE-Seqhas methodMerck0.60section
CITE-Seqhas methodRNA Expression0.60section

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