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A protein contact map represents the distance between all possible amino acid residue pairs of a three-dimensional protein structure using a binary two-dimensional matrix. For two residues i {\displaystyle i} and j {\displaystyle j} , the i j {\displaystyle ij} element of the matrix is 1 if the two residues are closer than a predetermined threshold, and…
The analysis highlights Overview, HB Plot and Contact map prediction as prominent areas in the source structure around Protein contact map.
Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.
Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.
High-confidence facts extracted from structured source data. Use them as anchors for further research.
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See recurring relationship patterns around Protein contact map before inspecting the individual extracted relationships.
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protein plot hydrogen hb structure contact bonds lipocalin tertiary p450 cyp2b4 open closed residues cytochrome conformational beta-lactoglobulin form ligand binding
TTTA extracted 1 structured relationship around Protein contact map. Examples in this analysis include retinol or fatty acids → instance of → Beta-lactoglobulin was found to have a role in the transport of hydrophobic ligands. The table shows each extracted connection, where it came from and its confidence.
| Subject | Predicate | Object | Confidence | Src |
|---|---|---|---|---|
| retinol or fatty acids | instance of | Beta-lactoglobulin was found to have a role in the transport of hydrophobic ligands | 0.80 | text |
The concept neighborhoods around Protein contact map bring nearby vocabulary together. In this analysis, examples include Structure, Map and Protein. Use the clusters to find adjacent concepts and terminology that may deserve separate research.
For Protein contact map, one of the stronger structural bridges in this analysis connects Protein contact map with Overview. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.
TTTA analyzes the structure around Protein contact map to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Overview, HB Plot & Contact map prediction, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.
Source: Wikipedia — Protein contact map · EN edition · Analysis: TopicsToTalkAbout