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Research this topic
Explore the main themes, entities and connections around PAS domain. Start with the topic map, then use the sections below for research and deeper semantic analysis.
Explore this topic
Start with a few of the strongest sections from the source topic. These are research directions, not a list of keywords you must use.
Examples of PAS in organisms
Pairwise sequenceHistidine kinasesCyclic-di-GMP synthesesMethyl-accepting chemotaxis proteinsWhite Collar-1
11 related topics
Related sensor domains
7 related topics
Other sensor domains
Histidine phosphotransfer domainsTwo-component regulatory systemsAdenylate cyclasesPhosphatasesCoiled coil
5 related topics
Discovery
Period circadian proteinAryl hydrocarbon receptor nuclear translocator proteinSingle-minded proteinPAS LOV
4 related topics
Key facts & relationships
High-confidence facts extracted from structured source data. Use them as anchors for further research.
- AlphaFold
- IPR013767 · PF00989
- Available protein structures:
- IPR013767 · PF00989
- CDD
- cd00130
- ECOD
- 223.1.1
- InterPro
- IPR013767
- PDB
- 1byw, 1d06, 1d7e, 1dp6, 1dp8, 1dp9, 1drm, 1ew0, 1f98, 1f9i, 1gsv, 1gsw, 1gsx, 1kou, 1ll8, 1lsv, 1lsw, 1lsx, 1lt0, 1mzu, 1nwz, 1odv, 1ot6, 1ot9, 1ota, 1o…
Topics to explore
A structured outline of related entities, concepts and subtopics. Open any item to build a new map centered on it.Browse the full topic structure. Each item opens a new analysis centered on that subject.
Overview
- Protein domain
- Structural motif
- Circadian clock
- Chaperonins Chaperonin
- Dioxin Dioxins and dioxin-like compounds
- NPAS2
- Hypoxia inducible factor Hypoxia-inducible factors
- Ligand Ligand (biochemistry)
- BHLH Basic helix-loop-helix
- C-terminus
Discovery
- Period circadian protein Period (gene)
- Aryl hydrocarbon receptor nuclear translocator protein Aryl hydrocarbon receptor nuclear translocator
- Single-minded protein SIM1
- PAS LOV Light-oxygen-voltage-sensing domain
Structure
- Β-sheet Beta sheet
- Α-helices Alpha helix
- Photoactive yellow protein
- Halorhodospira halophila
Examples of PAS in organisms
- Pairwise sequence Sequence alignment
- Histidine kinases Histidine kinase
- Cyclic-di-GMP syntheses Cyclic di-GMP
- Methyl-accepting chemotaxis proteins Methyl-accepting chemotaxis protein
- White Collar-1
- FRQ Frequency (gene)
- CLK CLOCK
- CYC Cycle (gene)
- Tim Timeless (gene)
- BMAL1 ARNTL
- CRY 1,2 Cryptochrome
Related sensor domains
- Eukaryotes Eukaryote
- Eubacteria Bacteria
- Phytochromes Phytochrome
- Phosphodiesterases Phosphodiesterase
- Calcium (Ca2+) channel Calcium channel
- Prokaryotic Prokaryote
- Chemotaxis
Other sensor domains
- Histidine phosphotransfer domains Histidine phosphotransfer domain
- Two-component regulatory systems Two-component regulatory system
- Adenylate cyclases Adenylate cyclase
- Phosphatases Phosphatase
- Coiled coil
Advanced semantic analysis
Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.
Map overview Semantic statistics
Number of nodes, edges, triples, density and central hubs. Use it to gauge the size and connectivity of the map.PAS domain
Nodes48
Edges47
Triples77
Avg. degree1.96
Density0.041667
Components1
How this topic connects Entity context
Quick relationship hints grouped by predicate. Useful for spotting recurring semantic connections around the current entity.See the strongest relationship patterns around the current topic before diving into the raw triples.
PAS domain
Top relations
related to Mammals · 13
PAS domain → Bmal, BMAL1, CLK, CRY, Cry1, Cry2, PAS, Pasd1, Per1, Per2, Per3, That, The
related to Drosophila · 8
PAS domain → CLK, CYC, In, PAS, PER, PER PAS, The, Tim
related to Structure · 8
PAS domain → Although, Halorhodospira, In, PAS, PYP, Structural, These, This
related to Cache domain · 7
PAS domain → As, Ca2, GAF, N-terminal, PAS, These, They
related to Neurospora · 7
PAS domain → FRQ, In, PAS, WC-1, WC-2, White Collar-1, White Collar-2
related to Arabidopsis · 6
PAS domain → Neurospora, NPH1, PAS, These, WC-1, ZTL
related to Bacteria · 3
PAS domain → GMP, Often, PAS
related to Discovery · 3
PAS domain → PAS, Per, The PAS
related to Examples of PAS in organisms · 3
PAS domain → Also, PAS, The PAS
AlphaFold · 2
PAS domain → IPR013767, PF00989
Important terminology Word statistics
Frequent words and multi-word phrases across the lead, headings, infobox and body. Useful for terminology coverage.Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.
Important terminology
pas domains domain protein proteins found sensor binding clk via also ligand structure interactions clock signaling c-terminus mammals shown light
Entity relationships Subject–Predicate–Object triples
Extracted RDF-like relationships with confidence and source. The table includes structured facts and lower-confidence contextual relations.| Subject | Predicate | Object | Confidence | Src |
|---|---|---|---|---|
| PAS domain | AlphaFold | IPR013767 | 1.00 | infobox |
| PAS domain | AlphaFold | PF00989 | 1.00 | infobox |
| PAS domain | Available protein structures: | IPR013767 | 1.00 | infobox |
| PAS domain | Available protein structures: | PF00989 | 1.00 | infobox |
| PAS domain | CDD | cd00130 | 1.00 | infobox |
| PAS domain | ECOD | 223.1.1 | 1.00 | infobox |
| PAS domain | InterPro | IPR013767 | 1.00 | infobox |
| PAS domain | PDB | 1byw, 1d06, 1d7e, 1dp6, 1dp8, 1dp9, 1drm, 1ew0, 1f98, 1f9i, 1gsv, 1gsw, 1gsx, 1kou, 1ll8, 1lsv, 1lsw, 1lsx, 1lt0, 1mzu, 1nwz, 1odv, 1ot6, 1ot9, 1ota, 1o… | 1.00 | infobox |
| PAS domain | Pfam | PF00989 | 1.00 | infobox |
| PAS domain | Pfam clan | CL0183 | 1.00 | infobox |
| PAS domain | PROSITE | PDOC50112 | 1.00 | infobox |
| PAS domain | SCOP2 | 2phy / SCOPe / SUPFAM | 1.00 | infobox |
| PAS domain | SMART | PAS | 1.00 | infobox |
| PAS domain | Symbol | PAS | 1.00 | infobox |
No triples extracted yet.
Related concept clusters Concept neighborhoods
Clusters of nearby vocabulary surrounding the topic. Scan them for adjacent concepts and language you may have missed.These clusters group vocabulary that occurs around closely connected concepts in the source material.
Connections between topic areas Semantic bridges
Bridge nodes connect otherwise separate parts of the map. Expand a row to inspect the topic groups on each side.Bridges can reveal useful research angles that are easy to miss in a flat list of related terms.
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