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DNMT3B: Interactions, Function & Clinical significance

DNA (cytosine-5)-methyltransferase 3 beta, is an enzyme that in humans in encoded by the DNMT3B gene. Mutation in this gene are associated with immunodeficiency, centromere instability and facial anomalies syndrome.

Language: English [EN]
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DNMT3B topic overview

The analysis highlights Interactions, Function and Clinical significance as prominent areas in the source structure around DNMT3B.

Related topics
19
Source areas
4
Connected nodes
23
Extracted relationships
111
Concept neighborhoods
10
Bridge connections
23

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 9 topics
Function · 4 topics
Clinical significance · 3 topics
Overview · 3 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

2.1.1.37
Aliases
DNMT3B, ICF, ICF1, M.HsaIIIB, DNA (cytosine-5-)-methyltransferase 3 beta, DNA methyltransferase 3 beta, FSHD4
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes3QKJ, 3FLG, 5CIU
Band
20q11.21 · 2|2 H1
Bgee
secondary oocyte · hair follicle · sperm · embryo · gonad
BioGPS
More reference expression data

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Function

Clinical significance

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How DNMT3B connects Entity context

The extracted context around DNMT3B shows recurring relationship patterns in the source. For example, DNMT3B → C-5 methylation of cytosine, cellular response to dexamethasone stimulus, cellular response to hyperoxia, chromatin binding, cytoplasm, DNA (cytosine-5-)-methyltransferase activity, DNA binding, DNA methylation, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-methyltransferase activity, histone deacetylase binding, intracellular membrane-bounded organelle, metal ion binding, methylation, methyltransferase activity, negative regulation of gene expression, epigenetic, negative regulation of histone H3-K9 methylation, negative regulation of transcription by RNA polymerase II, nucleoplasm, nucleus Another extracted example is DNMT3B → abdominal wall, body of pancreas, corpus epididymis, ejaculatory duct, embryo, epiblast, epithelium of vagina, ganglionic eminence, gonad, hair follicle, paramesonephric duct, pelvic part of vagina, primitive streak, secondary oocyte, sperm, tail of embryo, testicle, ventricular zone. Use these groups to spot repeated connection types before inspecting the individual relationships.

DNMT3B

Top relations

Gene ontology · 35
DNMT3B → C-5 methylation of cytosine, cellular response to dexamethasone stimulus, cellular response to hyperoxia, chromatin binding, cytoplasm, DNA (cytosine-5-)-methyltransferase activity, DNA binding, DNA methylation, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-methyltransferase activity, histone deacetylase binding, intracellular membrane-bounded organelle, metal ion binding, methylation, methyltransferase activity, negative regulation of gene expression, epigenetic, negative regulation of histone H3-K9 methylation, negative regulation of transcription by RNA polymerase II, nucleoplasm, nucleus
Bgee · 18
DNMT3B → abdominal wall, body of pancreas, corpus epididymis, ejaculatory duct, embryo, epiblast, epithelium of vagina, ganglionic eminence, gonad, hair follicle, paramesonephric duct, pelvic part of vagina, primitive streak, secondary oocyte, sperm, tail of embryo, testicle, ventricular zone
RNA expression pattern · 18
DNMT3B → abdominal wall, body of pancreas, corpus epididymis, ejaculatory duct, embryo, epiblast, epithelium of vagina, ganglionic eminence, gonad, hair follicle, paramesonephric duct, pelvic part of vagina, primitive streak, secondary oocyte, sperm, tail of embryo, testicle, ventricular zone
related to Interactions · 7
DNMT3B → CBX5, DNMT1, DNMT3A, KIF4A, NCAPG, SMC2, SUMO1
related to Clinical significance · 4
DNMT3B → DNA, ICF, Immunodeficiency-centromeric, Variants
related to External links · 4
DNMT3B → EC2, Medicine Medical Subject Headings, MeSH, National Library
Band · 2
DNMT3B → 20q11.21, 2|2 H1
Chr. · 2
DNMT3B → Chromosome 2 (mouse), Chromosome 20 (human)
End · 2
DNMT3B → 153,529,650 bp, 32,809,356 bp
2.1.1.37 · 1
DNMT3B → ↗

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

gene bp dna chr human band chromosome 20 methylation -methyltransferase location function methyltransferase enzyme mouse beta external variants anomalies syndrome

DNMT3B relationships Subject–Predicate–Object triples

TTTA extracted 111 structured relationships around DNMT3B. Examples in this analysis include DNMT3B → 2.1.1.37 → ↗ and DNMT3B → Aliases → DNMT3B, ICF, ICF1, M.HsaIIIB, DNA (cytosine-5-)-methyltransferase 3 beta, DNA methyltransferase 3 beta, FSHD4. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
DNMT3B2.1.1.371.00infobox
DNMT3BAliasesDNMT3B, ICF, ICF1, M.HsaIIIB, DNA (cytosine-5-)-methyltransferase 3 beta, DNA methyltransferase 3 beta, FSHD41.00infobox
DNMT3BAvailable structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes3QKJ, 3FLG, 5CIU1.00infobox
DNMT3BBand20q11.211.00infobox
DNMT3BBand2|2 H11.00infobox
DNMT3BBgeesecondary oocyte1.00infobox
DNMT3BBgeehair follicle1.00infobox
DNMT3BBgeesperm1.00infobox
DNMT3BBgeeembryo1.00infobox
DNMT3BBgeegonad1.00infobox
DNMT3BBgeetesticle1.00infobox
DNMT3BBgeeganglionic eminence1.00infobox
DNMT3BBgeebody of pancreas1.00infobox
DNMT3BBgeeventricular zone1.00infobox
DNMT3BBgeecorpus epididymis1.00infobox
DNMT3BBgeeepiblast1.00infobox
DNMT3BBgeeprimitive streak1.00infobox
DNMT3BBgeepelvic part of vagina1.00infobox
DNMT3BBgeeparamesonephric duct1.00infobox
DNMT3BBgeeepithelium of vagina1.00infobox
DNMT3BBgeeejaculatory duct1.00infobox
DNMT3BBgeetail of embryo1.00infobox
DNMT3BBgeeabdominal wall1.00infobox
DNMT3BBioGPSMore reference expression data1.00infobox
DNMT3BChr.Chromosome 20 (human)1.00infobox
DNMT3BChr.Chromosome 2 (mouse)1.00infobox
DNMT3BDatabasesNCBI: entry; OMA: entry1.00infobox
DNMT3BEnd32,809,356 bp1.00infobox
DNMT3BEnd153,529,650 bp1.00infobox
DNMT3BEnsemblENSG000000883051.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around DNMT3B bring nearby vocabulary together. In this analysis, examples include Gene, Activity and Cytosine-5-. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • DNMT3B
    • Gene
    • Activity
    • Cytosine-5-
    • Enzyme
    • Icf
    • Search
    • Function
    • Location
    • Methyltransferase
    • Chromosome
    • Human
    • Methylation
  • dnmt3b
    • Gene
    • Activity
    • Cytosine-5-
    • Enzyme
    • Icf
    • Search
    • Function
    • Location
    • Methyltransferase
    • Chromosome
    • Human
    • Methylation
  • gene
    • Function
    • Location
    • Methyltransferase
    • Chromosome
    • Human
    • Methylation
    • Bp
    • Chr
    • Activity
    • Anomalies
    • Cytosine-5-
    • End
  • dna methyltransferase
    • Methylation
    • Search
    • Gene
    • Dnmt3b
    • Function
    • Location
    • Methyltransferase
    • Activity
    • Cytosine-5-
    • Development
    • Enzyme
    • Epigenetic
  • function
    • Methyltransferase
    • Activity
    • Cytosine-5-
    • Search
    • Location
    • Chromosome
    • Human
    • Methylation
    • Gene
    • Bp
    • Chr
    • Epigenetic
  • enzyme
    • Encoded
    • External
    • Humans
    • Activity
    • Cytosine-5-
    • Dnmt3b
    • Icf
    • Search
    • Function
    • Gene
    • Location
    • Methyltransferase
  • embryonic development
    • Epigenetic
    • Methylation
    • Dna
    • End
    • Expression
    • Mouse
    • Nucleus
    • Protein
    • Search
    • Function
    • Location
    • Methyltransferase
  • epigenetic
    • Development
    • Expression
    • Mouse
    • Nucleus
    • Protein
    • Search
    • Function
    • Location
    • Methyltransferase
    • Human
    • Methylation
    • Gene

Connections between topic areas Semantic bridges

For DNMT3B, one of the stronger structural bridges in this analysis connects DNMT3B with Interactions. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
DNMT3BInteractions · splits 14 ⟂ 10
DNMT3BFunction · splits 19 ⟂ 5
DNMT3BOverview · splits 20 ⟂ 4
DNMT3BClinical significance · splits 20 ⟂ 4

Map overview Semantic statistics

DNMT3B

Nodes24
Edges23
Triples111
Avg. degree1.92
Density0.083333
Components1

Source & methodology

TTTA analyzes the structure around DNMT3B to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions, Function & Clinical significance, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — DNMT3B · EN edition · Analysis: TopicsToTalkAbout

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