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Protein contact map

A protein contact map represents the distance between all possible amino acid residue pairs of a three-dimensional protein structure using a binary two-dimensional matrix. For two residues i {\displaystyle i} and j {\displaystyle j} , the i j {\displaystyle ij} element of the matrix is 1 if the two residues are closer than a predetermined threshold, and…

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Contact map prediction

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Map overview Semantic statistics

Protein contact map

Nodes51
Edges50
Triples6
Avg. degree1.96
Density0.039216
Components1

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Protein contact map

Top relations

related to External links · 5
Protein contact map → CMAPpro, DISTILL, Protein Contact-Map Visualization, Structural Proteomics Tools, Tool

Important terminology Word statistics

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Important terminology

protein plot hydrogen hb structure contact bonds lipocalin tertiary p450 cyp2b4 open closed residues cytochrome conformational beta-lactoglobulin form ligand binding

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
retinol or fatty acidsinstance ofBeta-lactoglobulin was found to have a role in the transport of hydrophobic ligands0.80text
Protein contact maprelated to External linksDISTILL0.60section
Protein contact maprelated to External linksStructural Proteomics Tools0.60section
Protein contact maprelated to External linksCMAPpro0.60section
Protein contact maprelated to External linksTool0.60section
Protein contact maprelated to External linksProtein Contact-Map Visualization0.60section

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    Min side: 3
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