Collagen, type XVII, alpha 1

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Interactions

Interact Keratin 18 Actinin alpha 4 Dystonin Actinin, alpha 1

7 related topics

Structure

Collagen Integrin Plectin Hemidesmosomes Keratin

6 related topics

Pathology

Epidermolysis bullosa Bullous pemphigoid Herpes gestationis Recurrent corneal erosion dystrophy Synonymous mutation

6 related topics

SPARC and osteogenesis imperfecta

Homozygous Osteogenesis imperfecta

2 related topics

Key facts & relationships

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Aliases: COL17A1, BA16H23.2, BP180, BPA-2, BPAG2, LAD-1, ERED, collagen type XVII alpha 1, collagen type XVII alpha 1 chain, JEB4
Band: 10q25.1 · 19 D1|19 40.07 cM
Bgee: skin of abdomen · skin of leg · skin of arm · mucosa of transverse colon · minor salivary glands
BioGPS: More reference expression data
Chr.: Chromosome 10 (human) · Chromosome 19 (mouse)
Databases: NCBI: entry; OMA: entry

Topics to explore

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Overview

Collagen XIII Collagen, type XIII, alpha 1
XXIII Collagen, type XXIII, alpha 1
XXV Collagen, type XXV, alpha 1
Corneal Cornea
Epithelium
Corneal erosions Corneal erosion

Structure

Pathology

Epidermolysis bullosa
Bullous pemphigoid
Herpes gestationis
Recurrent corneal erosion dystrophy Recurrent corneal erosion dystrophy?action=edit&redlink=1
Synonymous mutation
Splicing RNA splicing

SPARC and osteogenesis imperfecta

Interactions

Advanced semantic analysis

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Map overview Semantic statistics

Nodes33

Edges32

Triples87

Avg. degree1.94

Density0.060606

Components1

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Collagen, type XVII, alpha 1

Top relations

Gene ontology · 22

Collagen, type XVII, alpha 1 → basement membrane, cell junction, cell-cell junction, cell-matrix adhesion, collagen, collagen-containing extracellular matrix, endoplasmic reticulum lumen, epidermis development, extracellular matrix, extracellular matrix organization, extracellular matrix structural constituent, extracellular matrix structural constituent conferring tensile strength, extracellular region, extracellular space, hemidesmosome, hemidesmosome assembly, integral component of membrane, integral component of plasma membrane, membrane, plasma membrane

Bgee · 19

Collagen, type XVII, alpha 1 → conjunctival fornix, corneal stroma, epidermis, esophagus, female urethra, lip, minor salivary glands, molar, mucosa of transverse colon, olfactory zone of nasal mucosa, rectum, right testis, skin of abdomen, skin of arm, skin of back, skin of external ear, skin of hip, skin of leg, skin of thigh

RNA expression pattern · 19

related to Interactions · 7

Collagen, type XVII, alpha 1 → Actinin, Collagen, CTNND1, Dystonin, ITGB4, Keratin, XVII

Band · 2

Collagen, type XVII, alpha 1 → 10q25.1, 19 D1|19 40.07 cM

Chr. · 2

Collagen, type XVII, alpha 1 → Chromosome 10 (human), Chromosome 19 (mouse)

End · 2

Collagen, type XVII, alpha 1 → 104,085,880 bp, 47,680,533 bp

Aliases · 1

Collagen, type XVII, alpha 1 → COL17A1, BA16H23.2, BP180, BPA-2, BPAG2, LAD-1, ERED, collagen type XVII alpha 1, collagen type XVII alpha 1 chain, JEB4

BioGPS · 1

Collagen, type XVII, alpha 1 → More reference expression data

Databases · 1

Collagen, type XVII, alpha 1 → NCBI: entry; OMA: entry

Important terminology Word statistics

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

collagen xvii gene protein bp col17a1 type human chr band corneal transmembrane structural adhesion hemidesmosomes mutations ectodomain chromosome 10 skin

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
Collagen, type XVII, alpha 1	Aliases	COL17A1, BA16H23.2, BP180, BPA-2, BPAG2, LAD-1, ERED, collagen type XVII alpha 1, collagen type XVII alpha 1 chain, JEB4	1.00	infobox
Collagen, type XVII, alpha 1	Band	10q25.1	1.00	infobox
Collagen, type XVII, alpha 1	Band	19 D1\|19 40.07 cM	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	skin of abdomen	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	skin of leg	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	skin of arm	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	mucosa of transverse colon	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	minor salivary glands	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	rectum	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	skin of thigh	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	skin of hip	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	olfactory zone of nasal mucosa	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	right testis	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	corneal stroma	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	skin of external ear	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	lip	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	conjunctival fornix	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	molar	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	skin of back	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	esophagus	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	epidermis	1.00	infobox
Collagen, type XVII, alpha 1	Bgee	female urethra	1.00	infobox
Collagen, type XVII, alpha 1	BioGPS	More reference expression data	1.00	infobox
Collagen, type XVII, alpha 1	Chr.	Chromosome 10 (human)	1.00	infobox
Collagen, type XVII, alpha 1	Chr.	Chromosome 19 (mouse)	1.00	infobox
Collagen, type XVII, alpha 1	Databases	NCBI: entry; OMA: entry	1.00	infobox
Collagen, type XVII, alpha 1	End	104,085,880 bp	1.00	infobox
Collagen, type XVII, alpha 1	End	47,680,533 bp	1.00	infobox
Collagen, type XVII, alpha 1	Ensembl	ENSG00000065618	1.00	infobox
Collagen, type XVII, alpha 1	Entrez	1308	1.00	infobox

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