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Threading (protein sequence)

In molecular biology, protein threading, also known as fold recognition, is a method of protein modeling which is used to model those proteins which have the same fold as proteins of known structures, but do not have homologous proteins with known structure. It differs from the homology modeling method of structure prediction as it (protein threading) is…

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Classification of protein structure

Structural Classification of Proteins databaseFamilySuperfamilyGlobinsActin
25 related topics

Protein threading software

HHsearchHidden Markov modelsRAPTORRaptorXPhyre
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Overview

Molecular biologyProtein modelingProteinsFoldStructures
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Classification of protein structure

Protein threading software

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Threading (protein sequence)

Nodes44
Edges43
Triples7
Avg. degree1.95
Density0.045455
Components1

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Important terminology

threading protein structure sequence structures structural proteins prediction homology alignment modeling fold template based used target pdb recognition different model

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SubjectPredicateObjectConfidenceSrc
Protein Data Bankinstance ofThis generally involves selecting protein structures from databases0.80text
conditional random fieldsinstance ofResearchers have made use of many combinatorial optimization methods0.80text
simulated annealinginstance ofResearchers have made use of many combinatorial optimization methods0.80text
branchinstance ofResearchers have made use of many combinatorial optimization methods0.80text
boundinstance ofResearchers have made use of many combinatorial optimization methods0.80text
and linear programminginstance ofResearchers have made use of many combinatorial optimization methods0.80text
searching to arrive at heuristic solutionsinstance ofResearchers have made use of many combinatorial optimization methods0.80text

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