Rhodopsin

Use the mouse wheel or two fingers (on touchscreens) to zoom in and out of the map.

Map view:

Zoom: 100%

More settings

Connection length 100% Label size 100% Node size 100% Line width 100% Label width 100%

Export map as:

Rhodopsin topic overview

The analysis highlights History, Structure and Phototransduction as prominent areas in the source structure around Rhodopsin.

Related topics: 64
Source areas: 6
Connected nodes: 70
Extracted relationships: 184
Concept neighborhoods: 20
Bridge connections: 70

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Structure · 21 topics

Phototransduction · 15 topics

History · 11 topics

Overview · 11 topics

Diseases of the retina · 3 topics

General · 3 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases: RHO, CSNBAD1, OPN2, RP4, rhodopsin, Rhodopsin, visual purple
Available structures: Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4ZWJ, 5DGY
Band: 3q22.1 · 6 E3|6 53.72 cM
Bgee: choroid · buccal mucosa cell · testicle · retina · retinal pigment epithelium
BioGPS: More reference expression data
Chr.: Chromosome 3 (human) · Chromosome 6 (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

History

Diseases of the retina

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How Rhodopsin connects Entity context

The extracted context around Rhodopsin shows recurring relationship patterns in the source. For example, Rhodopsin → 11-cis retinal binding, absorption of visible light, cell projection, cell-cell junction, cellular response to light stimulus, ciliary membrane, detection of light stimulus, G protein-coupled photoreceptor activity, G protein-coupled receptor activity, G protein-coupled receptor signaling pathway, Golgi apparatus, Golgi membrane, Golgi-associated vesicle membrane, integral component of membrane, integral component of plasma membrane, membrane, metal ion binding, photoreceptor activity, photoreceptor cell maintenance, photoreceptor disc membrane Another extracted example is Rhodopsin → buccal mucosa cell, choroid, ciliary body, conjunctival fornix, corneal stroma, epithelium of lens, gastrula, iris, lower lobe of lung, neural layer of retina, occipital lobe, outer nuclear layer, pars reticulata, retina, retinal pigment epithelium, secondary oocyte, superior frontal gyrus, testicle, tibiofemoral joint. Use these groups to spot repeated connection types before inspecting the individual relationships.

Top relations

Gene ontology · 39

Rhodopsin → 11-cis retinal binding, absorption of visible light, cell projection, cell-cell junction, cellular response to light stimulus, ciliary membrane, detection of light stimulus, G protein-coupled photoreceptor activity, G protein-coupled receptor activity, G protein-coupled receptor signaling pathway, Golgi apparatus, Golgi membrane, Golgi-associated vesicle membrane, integral component of membrane, integral component of plasma membrane, membrane, metal ion binding, photoreceptor activity, photoreceptor cell maintenance, photoreceptor disc membrane

Bgee · 19

Rhodopsin → buccal mucosa cell, choroid, ciliary body, conjunctival fornix, corneal stroma, epithelium of lens, gastrula, iris, lower lobe of lung, neural layer of retina, occipital lobe, outer nuclear layer, pars reticulata, retina, retinal pigment epithelium, secondary oocyte, superior frontal gyrus, testicle, tibiofemoral joint

RNA expression pattern · 19

related to External links · 15

Rhodopsin → Archived, Fernandez, Jones BW, Kolb, March, Medicine Medical Subject Headings, MeSH, National Library, Nelson, The, The Rhodopsin ProteinPhotoisomerization, University, Utah, Wayback Machine, Webvision Home Page

related to Structure · 14

Rhodopsin → A-based, Also, Artificially, G-protein-coupled, GPCR, GPCRs, However, It, Opsins, Schiff-base, Such, The, Therefore, Thus

related to Activation · 13

Rhodopsin → CH, George Wald, II, In, IR, NH, Nobel, Schiff, Schiff's, The, This, UV/Vis, When

related to history · 10

Rhodopsin → Ancient Greek, Franz Christian Boll, G-protein-coupled, German, It, The, Today, When George Wald, When Wald, Wilhelm Friedrich Kühne

related to Deactivation · 9

Rhodopsin → During, Higher, II, In, Meta II, Meta III, Schiff, This, Whether

related to Diseases of the retina · 6

Rhodopsin → Golgi, In, Mutations, Other, Several, X-linked

related to Phototransduction cascade · 6

Rhodopsin → G-protein, Gt, GTP, Metarhodopsin II, The, This

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

light retinal protein opsin phototransduction gene visual binding receptor bp lysine chr human band ii meta 11-cis-retinal all-trans-retinal chromosome membrane

Rhodopsin relationships Subject–Predicate–Object triples

TTTA extracted 184 structured relationships around Rhodopsin. Examples in this analysis include Rhodopsin → Aliases → RHO, CSNBAD1, OPN2, RP4, rhodopsin, Rhodopsin, visual purple and Rhodopsin → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4ZWJ, 5DGY. The table shows each extracted connection, where it came from and its confidence.

Subject	Predicate	Object	Confidence	Src
Rhodopsin	Aliases	RHO, CSNBAD1, OPN2, RP4, rhodopsin, Rhodopsin, visual purple	1.00	infobox
Rhodopsin	Available structures	Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes4ZWJ, 5DGY	1.00	infobox
Rhodopsin	Band	3q22.1	1.00	infobox
Rhodopsin	Band	6 E3\|6 53.72 cM	1.00	infobox
Rhodopsin	Bgee	choroid	1.00	infobox
Rhodopsin	Bgee	buccal mucosa cell	1.00	infobox
Rhodopsin	Bgee	testicle	1.00	infobox
Rhodopsin	Bgee	retina	1.00	infobox
Rhodopsin	Bgee	retinal pigment epithelium	1.00	infobox
Rhodopsin	Bgee	secondary oocyte	1.00	infobox
Rhodopsin	Bgee	lower lobe of lung	1.00	infobox
Rhodopsin	Bgee	pars reticulata	1.00	infobox
Rhodopsin	Bgee	superior frontal gyrus	1.00	infobox
Rhodopsin	Bgee	occipital lobe	1.00	infobox
Rhodopsin	Bgee	neural layer of retina	1.00	infobox
Rhodopsin	Bgee	epithelium of lens	1.00	infobox
Rhodopsin	Bgee	ciliary body	1.00	infobox
Rhodopsin	Bgee	iris	1.00	infobox
Rhodopsin	Bgee	corneal stroma	1.00	infobox
Rhodopsin	Bgee	conjunctival fornix	1.00	infobox
Rhodopsin	Bgee	gastrula	1.00	infobox
Rhodopsin	Bgee	outer nuclear layer	1.00	infobox
Rhodopsin	Bgee	tibiofemoral joint	1.00	infobox
Rhodopsin	BioGPS	More reference expression data	1.00	infobox
Rhodopsin	Chr.	Chromosome 3 (human)	1.00	infobox
Rhodopsin	Chr.	Chromosome 6 (mouse)	1.00	infobox
Rhodopsin	Databases	NCBI: entry; OMA: entry	1.00	infobox
Rhodopsin	End	129,535,344 bp	1.00	infobox
Rhodopsin	End	115,916,997 bp	1.00	infobox
Rhodopsin	Ensembl	ENSG00000163914	1.00	infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around Rhodopsin bring nearby vocabulary together. In this analysis, examples include Protein, Light and Retinal. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

Rhodopsin
- Protein
- Light
- Retinal
- Membrane
- Gene
- Phototransduction
- Receptor
- Binding
- 11-cis-retinal
- Lysine
- Visual
- Diseases
rhodopsin
- Protein
- Light
- Retinal
- Membrane
- Gene
- Phototransduction
- Receptor
- Binding
- 11-cis-retinal
- Lysine
- Visual
- Diseases
protein
- Retinal
- Receptor
- Visual
- Rhodopsin
- Rho
- Outer
- Rod
- Segment
- Membrane
- Gene
- Phototransduction
- Light
gene
- Diseases
- Location
- Rho
- Chromosome
- Human
- Retina
- Bp
- Chr
- Visual
- Eye
- Purple
- Band
g-protein-coupled receptor
- Phototransduction
- Visual
- Rho
- Receptor
- Light
- Purple
- Including
- Photoreceptor
- Rhodopsin
- Opsins
- Eye
- Gene
light
- Rhodopsin
- Phototransduction
- Receptor
- Visual
- Sensitive
- Opsins
- Protein
- Retinal
- Eye
- Location
- Purple
- Rho
receptor protein
- Phototransduction
- Retinal
- Visual
- Rho
- Receptor
- Rhodopsin
- Light
- Outer
- Rod
- Segment
- Membrane
- Gene
visual phototransduction
- Purple
- Rho
- Phototransduction
- Receptor
- Visual
- Retina
- Gene
- Location
- Activation
- Also
- Chromosome
- Human

Connections between topic areas Semantic bridges

For Rhodopsin, one of the stronger structural bridges in this analysis connects Rhodopsin with Structure. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3

Rhodopsin — Structure · splits 49 ⟂ 22

Rhodopsin — Phototransduction · splits 55 ⟂ 16

Rhodopsin — Overview · splits 59 ⟂ 12

Rhodopsin — History · splits 59 ⟂ 12

Rhodopsin — General · splits 67 ⟂ 4

Rhodopsin — Diseases of the retina · splits 67 ⟂ 4

Map overview Semantic statistics

Rhodopsin

Nodes71

Edges70

Triples184

Avg. degree1.97

Density0.028169

Components1

Source & methodology

TTTA analyzes the structure around Rhodopsin to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as History, Structure & Phototransduction, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — Rhodopsin · EN edition · Analysis: TopicsToTalkAbout