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RBM39: Interactions & Overview

RNA-binding protein 39 is a protein that in humans is encoded by the RBM39 gene.

Language: English [EN]
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RBM39 topic overview

The analysis highlights Interactions and Overview as prominent areas in the source structure around RBM39.

Related topics
6
Source areas
2
Connected nodes
8
Extracted relationships
77
Concept neighborhoods
7
Bridge connections
8

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 4 topics
Overview · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
RBM39, CAPER, CAPERalpha, FSAP59, HCC1, RNPC2, RNA binding motif protein 39
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2JRS, 2MHN, 4OO6, 4OZ0, 4OZ1, 4YUD
Band
20q11.22 · 2|2 H1
Bgee
right uterine tube · Achilles tendon · right lobe of thyroid gland · left ovary · right ovary
BioGPS
More reference expression data
Chr.
Chromosome 20 (human) · Chromosome 2 (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How RBM39 connects Entity context

The extracted context around RBM39 shows recurring relationship patterns in the source. For example, RBM39 → Achilles tendon, body of uterus, canal of the cervix, genital tubercle, Gonadal ridge, granulocyte, left lobe of thyroid gland, left ovary, medullary collecting duct, neural layer of retina, neural tube, right lobe of thyroid gland, right ovary, right uterine tube, Rostral migratory stream, spermatocyte, sural nerve, tail of embryo, ventricular zone Another extracted example is RBM39 → microtubule cytoskeleton, microtubule organizing center, mRNA processing, nuclear speck, nucleic acid binding, nucleoplasm, nucleus, protein binding, protein-containing complex, regulation of transcription, DNA-templated, RNA binding, RNA processing, RNA splicing, transcription, DNA-templated. Use these groups to spot repeated connection types before inspecting the individual relationships.

RBM39

Top relations

Bgee · 19
RBM39 → Achilles tendon, body of uterus, canal of the cervix, genital tubercle, Gonadal ridge, granulocyte, left lobe of thyroid gland, left ovary, medullary collecting duct, neural layer of retina, neural tube, right lobe of thyroid gland, right ovary, right uterine tube, Rostral migratory stream, spermatocyte, sural nerve, tail of embryo, ventricular zone
RNA expression pattern · 19
RBM39 → Achilles tendon, body of uterus, canal of the cervix, genital tubercle, Gonadal ridge, granulocyte, left lobe of thyroid gland, left ovary, medullary collecting duct, neural layer of retina, neural tube, right lobe of thyroid gland, right ovary, right uterine tube, Rostral migratory stream, spermatocyte, sural nerve, tail of embryo, ventricular zone
Gene ontology · 14
RBM39 → microtubule cytoskeleton, microtubule organizing center, mRNA processing, nuclear speck, nucleic acid binding, nucleoplasm, nucleus, protein binding, protein-containing complex, regulation of transcription, DNA-templated, RNA binding, RNA processing, RNA splicing, transcription, DNA-templated
Band · 2
RBM39 → 20q11.22, 2|2 H1
Chr. · 2
RBM39 → Chromosome 2 (mouse), Chromosome 20 (human)
End · 2
RBM39 → 156,180,238 bp, 35,742,312 bp
related to Interactions · 2
RBM39 → C-jun, Estrogen
Aliases · 1
RBM39 → RBM39, CAPER, CAPERalpha, FSAP59, HCC1, RNPC2, RNA binding motif protein 39
Available structures · 1
RBM39 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2JRS, 2MHN, 4OO6, 4OZ0, 4OZ1, 4YUD
BioGPS · 1
RBM39 → More reference expression data

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

bp gene protein chr human band chromosome 20 mouse location encoded rna binding 39 function search 742 312 end 35

RBM39 relationships Subject–Predicate–Object triples

TTTA extracted 77 structured relationships around RBM39. Examples in this analysis include RBM39 → Aliases → RBM39, CAPER, CAPERalpha, FSAP59, HCC1, RNPC2, RNA binding motif protein 39 and RBM39 → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2JRS, 2MHN, 4OO6, 4OZ0, 4OZ1, 4YUD. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
RBM39AliasesRBM39, CAPER, CAPERalpha, FSAP59, HCC1, RNPC2, RNA binding motif protein 391.00infobox
RBM39Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2JRS, 2MHN, 4OO6, 4OZ0, 4OZ1, 4YUD1.00infobox
RBM39Band20q11.221.00infobox
RBM39Band2|2 H11.00infobox
RBM39Bgeeright uterine tube1.00infobox
RBM39BgeeAchilles tendon1.00infobox
RBM39Bgeeright lobe of thyroid gland1.00infobox
RBM39Bgeeleft ovary1.00infobox
RBM39Bgeeright ovary1.00infobox
RBM39Bgeeleft lobe of thyroid gland1.00infobox
RBM39Bgeesural nerve1.00infobox
RBM39Bgeebody of uterus1.00infobox
RBM39Bgeeventricular zone1.00infobox
RBM39Bgeecanal of the cervix1.00infobox
RBM39Bgeegenital tubercle1.00infobox
RBM39Bgeetail of embryo1.00infobox
RBM39Bgeeneural layer of retina1.00infobox
RBM39BgeeRostral migratory stream1.00infobox
RBM39Bgeespermatocyte1.00infobox
RBM39Bgeeneural tube1.00infobox
RBM39Bgeegranulocyte1.00infobox
RBM39Bgeemedullary collecting duct1.00infobox
RBM39BgeeGonadal ridge1.00infobox
RBM39BioGPSMore reference expression data1.00infobox
RBM39Chr.Chromosome 20 (human)1.00infobox
RBM39Chr.Chromosome 2 (mouse)1.00infobox
RBM39DatabasesNCBI: entry; OMA: entry1.00infobox
RBM39End35,742,312 bp1.00infobox
RBM39End156,180,238 bp1.00infobox
RBM39EnsemblENSG000001310511.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around RBM39 bring nearby vocabulary together. In this analysis, examples include Binding, Function and Gene. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • protein
    • Encoded
    • Rbm39
    • Gene
    • Binding
    • Function
    • Nucleus
    • Rna
    • Search
    • Location
    • Mouse
    • Chromosome
    • Human
  • gene
    • Location
    • Chromosome
    • Human
    • Rbm39
    • Bp
    • Chr
    • Protein
    • Binding
    • End
    • Function
    • Rna
    • Search
  • RBM39
    • Binding
    • Function
    • Gene
    • Rna
    • Search
    • Location
    • Chromosome
    • Human
    • Bp
    • Chr
    • Interactions
    • Reading
  • rbm39
    • Binding
    • Function
    • Gene
    • Rna
    • Search
    • Location
    • Chromosome
    • Human
    • Bp
    • Chr
    • Interactions
    • Reading
  • interactions
    • Reading
    • References
    • Rna
    • Search
    • Location
    • Human
    • Rbm39
    • Protein
  • estrogen receptor alpha
    • Mouse
    • Rbm39
    • Protein
  • estrogen receptor beta
    • Mouse
    • Rbm39
    • Protein

Connections between topic areas Semantic bridges

For RBM39, one of the stronger structural bridges in this analysis connects RBM39 with Interactions. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
RBM39Interactions · splits 4 ⟂ 5
RBM39Overview · splits 6 ⟂ 3

Map overview Semantic statistics

RBM39

Nodes9
Edges8
Triples77
Avg. degree1.78
Density0.222222
Components1

Source & methodology

TTTA analyzes the structure around RBM39 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — RBM39 · EN edition · Analysis: TopicsToTalkAbout

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