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PEX5: Standards, Interactions & Overview

Peroxisomal targeting signal 1 receptor (PTS1R) is a protein that in humans is encoded by the PEX5 gene.

Language: English [EN]
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PEX5 topic overview

The analysis highlights Standards, Interactions and Overview as prominent areas in the source structure around PEX5.

Related topics
16
Source areas
2
Connected nodes
18
Extracted relationships
92
Concept neighborhoods
12
Bridge connections
18

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Overview · 12 topics
Interactions · 4 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
PEX5, peroxisomal biogenesis factor 5, RCDP5, PTS1R, PBD2B, PTS1-BP, PXR1, PBD2A
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1FCH, 2C0L, 2C0M, 2J9Q, 2W84, 3R9A, 4BXU, 4KXK, 4KYO
Band
12p13.31 · 6 F2|6 59.15 cM
Bgee
gastrocnemius muscle · left testis · right testis · C1 segment · skeletal muscle tissue
BioGPS
More reference expression data
Chr.
Chromosome 12 (human) · Chromosome 6 (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How PEX5 connects Entity context

The extracted context around PEX5 shows recurring relationship patterns in the source. For example, PEX5 → cytoplasm, cytosol, enzyme binding, Golgi apparatus, intracellular anatomical structure, membrane, negative regulation of protein homotetramerization, peroxisomal matrix, peroxisomal membrane, peroxisome, peroxisome matrix targeting signal-1 binding, peroxisome targeting sequence binding, protein binding, protein C-terminus binding, protein import into peroxisome matrix, protein import into peroxisome matrix, docking, protein import into peroxisome matrix, translocation, protein import into peroxisome membrane, protein N-terminus binding, protein targeting to peroxisome Another extracted example is PEX5 → brown adipose tissue, C1 segment, gastrocnemius muscle, granulocyte, hippocampus proper, left lobe of liver, left testis, lip, muscle of thigh, prefrontal cortex, proximal tubule, putamen, right frontal lobe, right kidney, right testis, skeletal muscle tissue, spermatocyte, stroma of bone marrow, substantia nigra, ventricular zone. Use these groups to spot repeated connection types before inspecting the individual relationships.

PEX5

Top relations

Gene ontology · 26
PEX5 → cytoplasm, cytosol, enzyme binding, Golgi apparatus, intracellular anatomical structure, membrane, negative regulation of protein homotetramerization, peroxisomal matrix, peroxisomal membrane, peroxisome, peroxisome matrix targeting signal-1 binding, peroxisome targeting sequence binding, protein binding, protein C-terminus binding, protein import into peroxisome matrix, protein import into peroxisome matrix, docking, protein import into peroxisome matrix, translocation, protein import into peroxisome membrane, protein N-terminus binding, protein targeting to peroxisome
Bgee · 20
PEX5 → brown adipose tissue, C1 segment, gastrocnemius muscle, granulocyte, hippocampus proper, left lobe of liver, left testis, lip, muscle of thigh, prefrontal cortex, proximal tubule, putamen, right frontal lobe, right kidney, right testis, skeletal muscle tissue, spermatocyte, stroma of bone marrow, substantia nigra, ventricular zone
RNA expression pattern · 20
PEX5 → brown adipose tissue, C1 segment, gastrocnemius muscle, granulocyte, hippocampus proper, left lobe of liver, left testis, lip, muscle of thigh, prefrontal cortex, proximal tubule, putamen, right frontal lobe, right kidney, right testis, skeletal muscle tissue, spermatocyte, stroma of bone marrow, substantia nigra, ventricular zone
related to Interactions · 3
PEX5 → PEX12, PEX13, PEX14
Band · 2
PEX5 → 12p13.31, 6 F2|6 59.15 cM
Chr. · 2
PEX5 → Chromosome 12 (human), Chromosome 6 (mouse)
End · 2
PEX5 → 124,392,026 bp, 7,218,574 bp
Aliases · 1
PEX5 → PEX5, peroxisomal biogenesis factor 5, RCDP5, PTS1R, PBD2B, PTS1-BP, PXR1, PBD2A
Available structures · 1
PEX5 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1FCH, 2C0L, 2C0M, 2J9Q, 2W84, 3R9A, 4BXU, 4KXK, 4KYO
BioGPS · 1
PEX5 → More reference expression data

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

peroxisomal pts1r bp chr human band gene protein chromosome 12 targeting peroxisome location cytosol receptor transport mouse sequence binding external

PEX5 relationships Subject–Predicate–Object triples

TTTA extracted 92 structured relationships around PEX5. Examples in this analysis include PEX5 → Aliases → PEX5, peroxisomal biogenesis factor 5, RCDP5, PTS1R, PBD2B, PTS1-BP, PXR1, PBD2A and PEX5 → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1FCH, 2C0L, 2C0M, 2J9Q, 2W84, 3R9A, 4BXU, 4KXK, 4KYO. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
PEX5AliasesPEX5, peroxisomal biogenesis factor 5, RCDP5, PTS1R, PBD2B, PTS1-BP, PXR1, PBD2A1.00infobox
PEX5Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1FCH, 2C0L, 2C0M, 2J9Q, 2W84, 3R9A, 4BXU, 4KXK, 4KYO1.00infobox
PEX5Band12p13.311.00infobox
PEX5Band6 F2|6 59.15 cM1.00infobox
PEX5Bgeegastrocnemius muscle1.00infobox
PEX5Bgeeleft testis1.00infobox
PEX5Bgeeright testis1.00infobox
PEX5BgeeC1 segment1.00infobox
PEX5Bgeeskeletal muscle tissue1.00infobox
PEX5Bgeesubstantia nigra1.00infobox
PEX5Bgeeprefrontal cortex1.00infobox
PEX5Bgeeputamen1.00infobox
PEX5Bgeehippocampus proper1.00infobox
PEX5Bgeeright frontal lobe1.00infobox
PEX5Bgeeright kidney1.00infobox
PEX5Bgeeleft lobe of liver1.00infobox
PEX5Bgeegranulocyte1.00infobox
PEX5Bgeeproximal tubule1.00infobox
PEX5Bgeelip1.00infobox
PEX5Bgeespermatocyte1.00infobox
PEX5Bgeemuscle of thigh1.00infobox
PEX5Bgeeventricular zone1.00infobox
PEX5Bgeestroma of bone marrow1.00infobox
PEX5Bgeebrown adipose tissue1.00infobox
PEX5BioGPSMore reference expression data1.00infobox
PEX5Chr.Chromosome 12 (human)1.00infobox
PEX5Chr.Chromosome 6 (mouse)1.00infobox
PEX5DatabasesNCBI: entry; OMA: entry1.00infobox
PEX5End7,218,574 bp1.00infobox
PEX5End124,392,026 bp1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around PEX5 bring nearby vocabulary together. In this analysis, examples include Search, Location and Protein. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • PEX5
    • Search
    • Location
    • Protein
    • Targeting
    • Chromosome
    • Human
    • Bp
    • Chr
    • External
    • Pts1r
    • Binding
    • Biogenesis
  • pex5
    • Search
    • Location
    • Protein
    • Targeting
    • Chromosome
    • Human
    • Bp
    • Chr
    • External
    • Pts1r
    • Binding
    • Biogenesis
  • gene
    • Location
    • Pex5
    • Chromosome
    • Human
    • Bp
    • Chr
    • End
    • F2
    • Mouse
    • Peroxisomal
    • Search
    • Protein
  • peroxisomal
    • Pts1r
    • Pex5
    • Protein
    • Targeting
    • Gene
    • Binding
    • Cytosol
    • Receptor
    • Search
    • Sequence
    • Transport
    • Location
  • peroxisome
    • Entry
    • Ncbi
    • Sequence
    • Transport
    • Targeting
    • Binding
    • Biogenesis
    • Cytosol
    • End
    • F2
    • Mouse
    • Omim
  • cytosol
    • Binding
    • Protein
    • Pex14p
    • Skl
    • Peroxisomal
    • End
    • Entry
    • F2
    • Mouse
    • Ncbi
    • Receptor
    • Search
  • protein
    • Binding
    • Cytosol
    • Receptor
    • Pex5
    • Targeting
    • Pex14p
    • Pts1r
    • Skl
    • End
    • Entry
    • F2
    • Mouse
  • zellweger syndrome
    • Syndrome
    • Zellweger
    • Biogenesis
    • Entry
    • Ncbi
    • Omim
    • Peroxisome
    • Pts1r

Connections between topic areas Semantic bridges

For PEX5, one of the stronger structural bridges in this analysis connects PEX5 with Overview. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
PEX5Overview · splits 6 ⟂ 13
PEX5Interactions · splits 14 ⟂ 5

Map overview Semantic statistics

PEX5

Nodes19
Edges18
Triples92
Avg. degree1.89
Density0.105263
Components1

Source & methodology

TTTA analyzes the structure around PEX5 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Standards, Interactions & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — PEX5 · EN edition · Analysis: TopicsToTalkAbout

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