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PDCD6: Products, Interactions & Overview

Programmed cell death protein 6 is a protein that in humans is encoded by the PDCD6 gene.

Language: English [EN]
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PDCD6 topic overview

The analysis highlights Products, Interactions and Overview as prominent areas in the source structure around PDCD6.

Related topics
8
Source areas
2
Connected nodes
10
Extracted relationships
115
Concept neighborhoods
5
Bridge connections
10

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 6 topics
Overview · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
PDCD6, ALG-2, PEF1B, ALG2, programmed cell death 6
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2ZN8, 2ZN9, 2ZND, 2ZNE, 2ZRS, 2ZRT, 3AAJ, 3AAK, 3WXA
Band
5p15.33 · 13|13 C1
Bgee
stromal cell of endometrium · mucosa of transverse colon · right adrenal cortex · prefrontal cortex · left adrenal gland
BioGPS
n/a
Chr.
Chromosome 5 (human) · Chromosome 13 (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How PDCD6 connects Entity context

The extracted context around PDCD6 shows recurring relationship patterns in the source. For example, PDCD6 → activation of cysteine-type endopeptidase activity involved in apoptotic process, angiogenesis, apoptotic process, apoptotic signaling pathway, calcium ion binding, calcium-dependent cysteine-type endopeptidase activity, calcium-dependent protein binding, cellular response to heat, COPII vesicle coat, COPII vesicle coating, Cul3-RING ubiquitin ligase complex, cytoplasm, cytoplasmic vesicle, endoplasmic reticulum, endoplasmic reticulum exit site, endoplasmic reticulum membrane, endoplasmic reticulum to Golgi vesicle-mediated transport, endosome, ER to Golgi transport vesicle membrane, extracellular exosome Another extracted example is PDCD6 → anterior pituitary, Brodmann area 9, duodenum, endocardial cushion, endothelial cell of lymphatic vessel, Epithelium of choroid plexus, epithelium of small intestine, fetal liver hematopoietic progenitor cell, gonad, ileum, jejunum, left adrenal cortex, left adrenal gland, mucosa of transverse colon, prefrontal cortex, rectum, right adrenal cortex, right kidney, stromal cell of endometrium, vestibular sensory epithelium. Use these groups to spot repeated connection types before inspecting the individual relationships.

PDCD6

Top relations

Gene ontology · 46
PDCD6 → activation of cysteine-type endopeptidase activity involved in apoptotic process, angiogenesis, apoptotic process, apoptotic signaling pathway, calcium ion binding, calcium-dependent cysteine-type endopeptidase activity, calcium-dependent protein binding, cellular response to heat, COPII vesicle coat, COPII vesicle coating, Cul3-RING ubiquitin ligase complex, cytoplasm, cytoplasmic vesicle, endoplasmic reticulum, endoplasmic reticulum exit site, endoplasmic reticulum membrane, endoplasmic reticulum to Golgi vesicle-mediated transport, endosome, ER to Golgi transport vesicle membrane, extracellular exosome
Bgee · 20
PDCD6 → anterior pituitary, Brodmann area 9, duodenum, endocardial cushion, endothelial cell of lymphatic vessel, Epithelium of choroid plexus, epithelium of small intestine, fetal liver hematopoietic progenitor cell, gonad, ileum, jejunum, left adrenal cortex, left adrenal gland, mucosa of transverse colon, prefrontal cortex, rectum, right adrenal cortex, right kidney, stromal cell of endometrium, vestibular sensory epithelium
RNA expression pattern · 20
PDCD6 → anterior pituitary, Brodmann area 9, duodenum, endocardial cushion, endothelial cell of lymphatic vessel, Epithelium of choroid plexus, epithelium of small intestine, fetal liver hematopoietic progenitor cell, gonad, ileum, jejunum, left adrenal cortex, left adrenal gland, mucosa of transverse colon, prefrontal cortex, rectum, right adrenal cortex, right kidney, stromal cell of endometrium, vestibular sensory epithelium
related to Interactions · 5
PDCD6 → ANXA11, ASK1, Fas, PDCD6IP, PEF1
Band · 2
PDCD6 → 13|13 C1, 5p15.33
Chr. · 2
PDCD6 → Chromosome 13 (mouse), Chromosome 5 (human)
End · 2
PDCD6 → 314,974 bp, 74,465,699 bp
Aliases · 1
PDCD6 → PDCD6, ALG-2, PEF1B, ALG2, programmed cell death 6
Available structures · 1
PDCD6 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2ZN8, 2ZN9, 2ZND, 2ZNE, 2ZRS, 2ZRT, 3AAJ, 3AAK, 3WXA
BioGPS · 1
PDCD6 → n/a

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

gene human bp protein chr band cell chromosome location programmed death product mouse ucsc calcium binding homodimerization external search 974

PDCD6 relationships Subject–Predicate–Object triples

TTTA extracted 115 structured relationships around PDCD6. Examples in this analysis include PDCD6 → Aliases → PDCD6, ALG-2, PEF1B, ALG2, programmed cell death 6 and PDCD6 → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2ZN8, 2ZN9, 2ZND, 2ZNE, 2ZRS, 2ZRT, 3AAJ, 3AAK, 3WXA. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
PDCD6AliasesPDCD6, ALG-2, PEF1B, ALG2, programmed cell death 61.00infobox
PDCD6Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2ZN8, 2ZN9, 2ZND, 2ZNE, 2ZRS, 2ZRT, 3AAJ, 3AAK, 3WXA1.00infobox
PDCD6Band5p15.331.00infobox
PDCD6Band13|13 C11.00infobox
PDCD6Bgeestromal cell of endometrium1.00infobox
PDCD6Bgeemucosa of transverse colon1.00infobox
PDCD6Bgeeright adrenal cortex1.00infobox
PDCD6Bgeeprefrontal cortex1.00infobox
PDCD6Bgeeleft adrenal gland1.00infobox
PDCD6Bgeeleft adrenal cortex1.00infobox
PDCD6Bgeerectum1.00infobox
PDCD6BgeeBrodmann area 91.00infobox
PDCD6Bgeegonad1.00infobox
PDCD6Bgeeanterior pituitary1.00infobox
PDCD6Bgeejejunum1.00infobox
PDCD6Bgeeduodenum1.00infobox
PDCD6Bgeeileum1.00infobox
PDCD6Bgeeepithelium of small intestine1.00infobox
PDCD6Bgeeright kidney1.00infobox
PDCD6Bgeeendothelial cell of lymphatic vessel1.00infobox
PDCD6BgeeEpithelium of choroid plexus1.00infobox
PDCD6Bgeevestibular sensory epithelium1.00infobox
PDCD6Bgeeendocardial cushion1.00infobox
PDCD6Bgeefetal liver hematopoietic progenitor cell1.00infobox
PDCD6BioGPSn/a1.00infobox
PDCD6Chr.Chromosome 5 (human)1.00infobox
PDCD6Chr.Chromosome 13 (mouse)1.00infobox
PDCD6DatabasesNCBI: entry; OMA: entry1.00infobox
PDCD6End314,974 bp1.00infobox
PDCD6End74,465,699 bp1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around PDCD6 bring nearby vocabulary together. In this analysis, examples include Ucsc, Human and Gene. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • gene
    • Pdcd6
    • Human
    • Location
    • Programmed
    • Ucsc
    • Chromosome
    • Protein
    • Bp
    • Chr
    • Browser
    • End
    • Genome
  • PDCD6
    • Ucsc
    • Human
    • Gene
    • Location
    • Browser
    • Genome
    • Search
    • Programmed
    • Chromosome
    • Protein
    • Bp
    • Chr
  • pdcd6
    • Ucsc
    • Human
    • Gene
    • Location
    • Browser
    • Genome
    • Search
    • Programmed
    • Chromosome
    • Protein
    • Bp
    • Chr
  • protein
    • Partners
    • Receptor
    • Required
    • End
    • Mouse
    • Search
    • Ucsc
    • Band
    • Chromosome
    • Location
    • Bp
    • Chr
  • fas receptor
    • Search
    • Ucsc

Connections between topic areas Semantic bridges

For PDCD6, one of the stronger structural bridges in this analysis connects PDCD6 with Interactions. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
PDCD6Interactions · splits 4 ⟂ 7
PDCD6Overview · splits 8 ⟂ 3

Map overview Semantic statistics

PDCD6

Nodes11
Edges10
Triples115
Avg. degree1.82
Density0.181818
Components1

Source & methodology

TTTA analyzes the structure around PDCD6 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Products, Interactions & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — PDCD6 · EN edition · Analysis: TopicsToTalkAbout

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