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LIMS1

LIM and senescent cell antigen-like-containing domain protein 1 is a protein that in humans is encoded by the LIMS1 gene.

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3 related topics

Function

1 related topics

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2 related topics

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Aliases
LIMS1, PINCH, PINCH-1, PINCH1, LIM zinc finger domain containing 1
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1G47, 1NYP, 1U5S, 2COR, 2D8X, 2KBX, 3F6Q, 4HI8, 4HI9
Band
2q12.3 · 10 B4|10 29.31 cM
Bgee
monocyte · stromal cell of endometrium · gastrocnemius muscle · ascending aorta · muscle of thigh
BioGPS
n/a
Chr.
Chromosome 2 (human) · Chromosome 10 (mouse)

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Advanced semantic analysis

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Map overview Semantic statistics

LIMS1

Nodes10
Edges9
Triples95
Avg. degree1.8
Density0.2
Components1

How this topic connects Entity context

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LIMS1

Top relations

Gene ontology · 30
LIMS1 → cell junction, cell junction assembly, cell-cell adhesion, cell-cell junction, cell-cell junction organization, cellular response to transforming growth factor beta stimulus, cytoplasm, cytosol, epithelial to mesenchymal transition, establishment of protein localization, focal adhesion, membrane, metal ion binding, negative regulation of transcription, DNA-templated, perinuclear region of cytoplasm, plasma membrane, positive regulation of cell-substrate adhesion, positive regulation of focal adhesion assembly, positive regulation of gene expression, positive regulation of GTPase activity
Bgee · 20
LIMS1 → ascending aorta, atrioventricular valve, atrium, cardiac muscle tissue of left ventricle, corneal stroma, decidua, Descending thoracic aorta, epithelium of colon, gastrocnemius muscle, genital tubercle, granulocyte, left lung lobe, monocyte, muscle of thigh, sciatic nerve, Skeletal muscle tissue of biceps brachii, soleus muscle, stromal cell of endometrium, tail of embryo, tail of epididymis
RNA expression pattern · 20
LIMS1 → ascending aorta, atrioventricular valve, atrium, cardiac muscle tissue of left ventricle, corneal stroma, decidua, Descending thoracic aorta, epithelium of colon, gastrocnemius muscle, genital tubercle, granulocyte, left lung lobe, monocyte, muscle of thigh, sciatic nerve, Skeletal muscle tissue of biceps brachii, soleus muscle, stromal cell of endometrium, tail of embryo, tail of epididymis
Band · 2
LIMS1 → 10 B4|10 29.31 cM, 2q12.3
Chr. · 2
LIMS1 → Chromosome 10 (mouse), Chromosome 2 (human)
End · 2
LIMS1 → 108,687,246 bp, 58,260,513 bp
related to Interactions · 2
LIMS1 → Integrin-linked, NCK2
Aliases · 1
LIMS1 → LIMS1, PINCH, PINCH-1, PINCH1, LIM zinc finger domain containing 1
Available structures · 1
LIMS1 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1G47, 1NYP, 1U5S, 2COR, 2D8X, 2KBX, 3F6Q, 4HI8, 4HI9
BioGPS · 1
LIMS1 → n/a

Important terminology Word statistics

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Important terminology

bp protein gene chr human band chromosome lim kinase cell location zinc mouse adhesion signaling domain function integrin-linked encoded search

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
LIMS1AliasesLIMS1, PINCH, PINCH-1, PINCH1, LIM zinc finger domain containing 11.00infobox
LIMS1Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1G47, 1NYP, 1U5S, 2COR, 2D8X, 2KBX, 3F6Q, 4HI8, 4HI91.00infobox
LIMS1Band2q12.31.00infobox
LIMS1Band10 B4|10 29.31 cM1.00infobox
LIMS1Bgeemonocyte1.00infobox
LIMS1Bgeestromal cell of endometrium1.00infobox
LIMS1Bgeegastrocnemius muscle1.00infobox
LIMS1Bgeeascending aorta1.00infobox
LIMS1Bgeemuscle of thigh1.00infobox
LIMS1Bgeedecidua1.00infobox
LIMS1Bgeetail of epididymis1.00infobox
LIMS1BgeeDescending thoracic aorta1.00infobox
LIMS1Bgeeepithelium of colon1.00infobox
LIMS1BgeeSkeletal muscle tissue of biceps brachii1.00infobox
LIMS1Bgeegranulocyte1.00infobox
LIMS1Bgeeleft lung lobe1.00infobox
LIMS1Bgeegenital tubercle1.00infobox
LIMS1Bgeecardiac muscle tissue of left ventricle1.00infobox
LIMS1Bgeesciatic nerve1.00infobox
LIMS1Bgeesoleus muscle1.00infobox
LIMS1Bgeeatrioventricular valve1.00infobox
LIMS1Bgeecorneal stroma1.00infobox
LIMS1Bgeeatrium1.00infobox
LIMS1Bgeetail of embryo1.00infobox
LIMS1BioGPSn/a1.00infobox
LIMS1Chr.Chromosome 2 (human)1.00infobox
LIMS1Chr.Chromosome 10 (mouse)1.00infobox
LIMS1DatabasesNCBI: entry; OMA: entry1.00infobox
LIMS1End108,687,246 bp1.00infobox
LIMS1End58,260,513 bp1.00infobox

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