Research any topic before you write.

Find related topics. | Discover entities. | See connections. | Build a topical map.

ChIP-on-chip

ChIP-on-chip (also known as ChIP-chip) is a technology that combines chromatin immunoprecipitation ('ChIP') with DNA microarray ("chip"). Like regular ChIP, ChIP-on-chip is used to investigate interactions between proteins and DNA in vivo. Specifically, it allows the identification of the cistrome, the sum of binding sites, for DNA-binding proteins on a…

History, Works, Technology & Regions

Use the mouse wheel or two fingers (on touchscreens) to zoom in and out of the map.

Research this topic

Explore the main themes, entities and connections around ChIP-on-chip. Start with the topic map, then use the sections below for research and deeper semantic analysis.

Explore this topic

Start with a few of the strongest sections from the source topic. These are research directions, not a list of keywords you must use.

Workflow of a ChIP-on-chip experiment

Cross-linkedIn vitroFormaldehydeLysedSonication
20 related topics

Strengths and weaknesses

Tiled arraysChIPNucleosomeEpitopeImmunoprecipitate
11 related topics

Overview

Chromatin immunoprecipitationDNA microarrayChIPProteinsDNA
23 related topics

Technological platforms

CDNAsPCR-productsOligonucleotidesIn situRNAs
9 related topics

Topics to explore

Browse the full topic structure. Each item opens a new analysis centered on that subject.

Overview

Technological platforms

Workflow of a ChIP-on-chip experiment

Strengths and weaknesses

History

Alternatives

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

Map overview Semantic statistics

ChIP-on-chip

Nodes77
Edges76
Triples110
Avg. degree1.97
Density0.025974
Components1

How this topic connects Entity context

See the strongest relationship patterns around the current topic before diving into the raw triples.

ChIP-on-chip

Top relations

related to Further reading · 39
ChIP-on-chip → Adrien, Andrau, Benoukraf, Bibcode, Bioinformatics, Brown, Carroll, Cauchy, ChIP-chip, CoCAS, Denis, Fenouil, Ferrier, Frederic, Gottardo, Imbert, ISSN, Jaeger, Jean, Jean-Christophe
related to history · 22
ChIP-on-chip → Although, Brian Dynlacht, DNA, DNA-binding, E2F, However, III, In, Michael Zhang's, Myc, Nimblegen, ORFs, Other, Peggy Farnham's, Richard Young's, Saccharomyces, Since, The, The ChIP-on-chip, This
related to Strengths and weaknesses · 13
ChIP-on-chip → Although ChIP-on-chip, Another, As, DNA, DNA-binding, For, However, Most, Most ChIP-on-chip, So, The, These, Using
related to Technological platforms · 11
ChIP-on-chip → Also, Although, ChIP, DNA, Nowadays, ORFs, PCR-products, Probe, RNAs, The, They
related to Dry-lab portion of the workflow · 7
ChIP-on-chip → After, Furthermore, Generally, Problems, The, This, Those
related to Analysis and software · 5
ChIP-on-chip → Agilent ChIP-on-Chip, Analysis, ChIP-chip, CoCAS, MAT
related to External links · 5
ChIP-on-chip → Amkor Technology, Chip, CoC, ENCODE, Package Information
related to Workflow of a ChIP-on-chip experiment · 4
ChIP-on-chip → Last, Second, Starting, The

Important terminology Word statistics

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

dna genome proteins arrays analysis binding protein chromatin chip data antibodies regions sites array transcription interest using fragments experiment used

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Cy5 or Alexa 647.Finallyinstance ofthe single-stranded DNA fragments are labeled with a fluorescent tag0.80text
the fragments are poured over the surface of the DNA microarrayinstance ofthe single-stranded DNA fragments are labeled with a fluorescent tag0.80text
which is spotted with shortinstance ofthe single-stranded DNA fragments are labeled with a fluorescent tag0.80text
single-stranded sequences that cover the genomic portion of interestinstance ofthe single-stranded DNA fragments are labeled with a fluorescent tag0.80text
ChIP-on-chiprelated to Analysis and softwareCoCAS0.60section
ChIP-on-chiprelated to Analysis and softwareAnalysis0.60section
ChIP-on-chiprelated to Analysis and softwareAgilent ChIP-on-Chip0.60section
ChIP-on-chiprelated to Analysis and softwareMAT0.60section
ChIP-on-chiprelated to Analysis and softwareChIP-chip0.60section
ChIP-on-chiprelated to Dry-lab portion of the workflowAfter0.60section
ChIP-on-chiprelated to Dry-lab portion of the workflowThose0.60section
ChIP-on-chiprelated to Dry-lab portion of the workflowThis0.60section

Related concept clusters Concept neighborhoods

These clusters group vocabulary that occurs around closely connected concepts in the source material.

    Connections between topic areas Semantic bridges

    Bridges can reveal useful research angles that are easy to miss in a flat list of related terms.

    Min side: 3
    For writers, content strategists, SEOs, marketers and creators — from quick topic research to advanced semantic analysis.