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UPF3B

Regulator of nonsense transcripts 3B is a protein that in humans is encoded by the UPF3B gene.

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3 related topics

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2 related topics

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Aliases
UPF3B, HMRX62, MRXS14, RENT3B, UPF3X, Upf3p-X, UPF3BP1, UPF3BP2, UPF3BP3, UPF3 regulator of nonsense transcripts homolog B (yeast), UPF3 regulator of nonsense transcripts homolo…
Available structures
Available structuresPDBHuman UniProt search: PDBe RCSB List of PDB id codes1UW4, 2XB2
Band
Xq24 · X|X A3.3
Bgee
sural nerve · embryo · cerebellar hemisphere · ganglionic eminence · endothelial cell
BioGPS
More reference expression data
Chr.
X chromosome (human) · X chromosome (mouse)

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UPF3B

Nodes8
Edges7
Triples86
Avg. degree1.75
Density0.25
Components1

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UPF3B

Top relations

Gene ontology · 21
UPF3B → cytoplasm, cytosol, exon-exon junction complex, microtubule organizing center, mRNA 3'-end processing, mRNA binding, mRNA export from nucleus, mRNA splicing, via spliceosome, mRNA transport, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, nucleic acid binding, nucleolus, nucleoplasm, nucleus, positive regulation of translation, protein binding, RNA binding, RNA export from nucleus, structural constituent of nuclear pore, termination of RNA polymerase II transcription
Bgee · 20
UPF3B → amniotic fluid, cerebellar hemisphere, embryo, endothelial cell, epithelium of lens, fossa, ganglionic eminence, Ileal epithelium, islet of Langerhans, medullary collecting duct, neural layer of retina, Paneth cell, pineal gland, retinal pigment epithelium, right hemisphere of cerebellum, substantia nigra, sural nerve, testicle, ventricular zone, visceral pleura
RNA expression pattern · 20
UPF3B → amniotic fluid, cerebellar hemisphere, embryo, endothelial cell, epithelium of lens, fossa, ganglionic eminence, Ileal epithelium, islet of Langerhans, medullary collecting duct, neural layer of retina, Paneth cell, pineal gland, retinal pigment epithelium, right hemisphere of cerebellum, substantia nigra, sural nerve, testicle, ventricular zone, visceral pleura
Band · 2
UPF3B → Xq24, X|X A3.3
Chr. · 2
UPF3B → X chromosome (human), X chromosome (mouse)
End · 2
UPF3B → 119,852,998 bp, 37,110,322 bp
related to Interactions · 2
UPF3B → UPF1, UPF2
Aliases · 1
UPF3B → UPF3B, HMRX62, MRXS14, RENT3B, UPF3X, Upf3p-X, UPF3BP1, UPF3BP2, UPF3BP3, UPF3 regulator of nonsense transcripts homolog B (yeast), UPF3 regulator of nonsense transcripts homolo…
Available structures · 1
UPF3B → Available structuresPDBHuman UniProt search: PDBe RCSB List of PDB id codes1UW4, 2XB2
BioGPS · 1
UPF3B → More reference expression data

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Important terminology

gene protein mrna bp chromosome chr human band complex nuclear export exon-exon decay location encoded surveillance two mrnas nmd upstream

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
UPF3BAliasesUPF3B, HMRX62, MRXS14, RENT3B, UPF3X, Upf3p-X, UPF3BP1, UPF3BP2, UPF3BP3, UPF3 regulator of nonsense transcripts homolog B (yeast), UPF3 regulator of nonsense transcripts homolo…1.00infobox
UPF3BAvailable structuresAvailable structuresPDBHuman UniProt search: PDBe RCSB List of PDB id codes1UW4, 2XB21.00infobox
UPF3BBandXq241.00infobox
UPF3BBandX|X A3.31.00infobox
UPF3BBgeesural nerve1.00infobox
UPF3BBgeeembryo1.00infobox
UPF3BBgeecerebellar hemisphere1.00infobox
UPF3BBgeeganglionic eminence1.00infobox
UPF3BBgeeendothelial cell1.00infobox
UPF3BBgeeamniotic fluid1.00infobox
UPF3BBgeeright hemisphere of cerebellum1.00infobox
UPF3BBgeeventricular zone1.00infobox
UPF3BBgeetesticle1.00infobox
UPF3BBgeevisceral pleura1.00infobox
UPF3BBgeeIleal epithelium1.00infobox
UPF3BBgeePaneth cell1.00infobox
UPF3BBgeeneural layer of retina1.00infobox
UPF3BBgeepineal gland1.00infobox
UPF3BBgeemedullary collecting duct1.00infobox
UPF3BBgeeretinal pigment epithelium1.00infobox
UPF3BBgeeepithelium of lens1.00infobox
UPF3BBgeeislet of Langerhans1.00infobox
UPF3BBgeefossa1.00infobox
UPF3BBgeesubstantia nigra1.00infobox
UPF3BBioGPSMore reference expression data1.00infobox
UPF3BChr.X chromosome (human)1.00infobox
UPF3BChr.X chromosome (mouse)1.00infobox
UPF3BDatabasesNCBI: entry; OMA: entry1.00infobox
UPF3BEnd119,852,998 bp1.00infobox
UPF3BEnd37,110,322 bp1.00infobox

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