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SYNCRIP

Synaptotagmin-binding, cytoplasmic RNA-interacting protein (SYNCRIP), also known as heterogeneous nuclear ribonucleoprotein (hnRNP) Q or NS1-associated protein-1 (NSAP-1), is a protein that in humans is encoded by the SYNCRIP gene. As the name implies, SYNCRIP is localized predominantly in the cytoplasm. It is evolutionarily conserved across eukaryotes…

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Aliases
SYNCRIP, GRY-RBP, GRYRBP, HNRNPQ, HNRPQ1, NSAP1, PP68, hnRNP-Q, synaptotagmin binding cytoplasmic RNA interacting protein
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2DGU, 2MXT, 2NBB
Band
6q14.3 · 9|9 E3.1
Bgee
ventricular zone · ganglionic eminence · amniotic fluid · skin of thigh · skin of hip
BioGPS
More reference expression data
Chr.
Chromosome 6 (human) · Chromosome 9 (mouse)

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Overview

Structure and function

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Map overview Semantic statistics

SYNCRIP

Nodes35
Edges34
Triples112
Avg. degree1.94
Density0.057143
Components1

How this topic connects Entity context

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SYNCRIP

Top relations

Gene ontology · 28
SYNCRIP → catalytic step 2 spliceosome, cellular response to interferon-gamma, CRD-mediated mRNA stability complex, CRD-mediated mRNA stabilization, cytoplasm, endoplasmic reticulum, GAIT complex, histone pre-mRNA 3'end processing complex, intracellular membrane-bounded organelle, membrane, mRNA 5'-UTR binding, mRNA binding, mRNA processing, mRNA splicing, via spliceosome, negative regulation of translation, nucleic acid binding, nucleoplasm, nucleus, osteoblast differentiation, poly(A) binding
related to Structure and function · 21
SYNCRIP → AcD, Although, APOBEC-1, Arg-Gly-Gly, C-terminus, It, N-terminal, PPIs, RBPs, RGG, RNA, RNA-binding, RRM, RRM1, RRMs, The, The AcD, The RGG, The RRMs, There
Bgee · 18
SYNCRIP → abdominal wall, amniotic fluid, aortic valve, ascending aorta, epiblast, ganglionic eminence, hand, mandibular prominence, maxillary prominence, secondary oocyte, skin of hip, skin of thigh, sperm, stromal cell of endometrium, tail of embryo, tail of epididymis, tendon of biceps brachii, ventricular zone
RNA expression pattern · 18
SYNCRIP → abdominal wall, amniotic fluid, aortic valve, ascending aorta, epiblast, ganglionic eminence, hand, mandibular prominence, maxillary prominence, secondary oocyte, skin of hip, skin of thigh, sperm, stromal cell of endometrium, tail of embryo, tail of epididymis, tendon of biceps brachii, ventricular zone
related to Interactions · 4
SYNCRIP → ACF, APOBEC1, SYT7, SYT9
Band · 2
SYNCRIP → 6q14.3, 9|9 E3.1
Chr. · 2
SYNCRIP → Chromosome 6 (human), Chromosome 9 (mouse)
End · 2
SYNCRIP → 85,644,063 bp, 88,364,627 bp
Aliases · 1
SYNCRIP → SYNCRIP, GRY-RBP, GRYRBP, HNRNPQ, HNRPQ1, NSAP1, PP68, hnRNP-Q, synaptotagmin binding cytoplasmic RNA interacting protein
Available structures · 1
SYNCRIP → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2DGU, 2MXT, 2NBB

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Important terminology

rna bp gene chr human band binding mrna chromosome complex cytoplasmic protein function domain isoform nuclear humans interactions location cytoplasm

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
SYNCRIPAliasesSYNCRIP, GRY-RBP, GRYRBP, HNRNPQ, HNRPQ1, NSAP1, PP68, hnRNP-Q, synaptotagmin binding cytoplasmic RNA interacting protein1.00infobox
SYNCRIPAvailable structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2DGU, 2MXT, 2NBB1.00infobox
SYNCRIPBand6q14.31.00infobox
SYNCRIPBand9|9 E3.11.00infobox
SYNCRIPBgeeventricular zone1.00infobox
SYNCRIPBgeeganglionic eminence1.00infobox
SYNCRIPBgeeamniotic fluid1.00infobox
SYNCRIPBgeeskin of thigh1.00infobox
SYNCRIPBgeeskin of hip1.00infobox
SYNCRIPBgeetendon of biceps brachii1.00infobox
SYNCRIPBgeesperm1.00infobox
SYNCRIPBgeestromal cell of endometrium1.00infobox
SYNCRIPBgeesecondary oocyte1.00infobox
SYNCRIPBgeetail of epididymis1.00infobox
SYNCRIPBgeetail of embryo1.00infobox
SYNCRIPBgeeaortic valve1.00infobox
SYNCRIPBgeeascending aorta1.00infobox
SYNCRIPBgeemandibular prominence1.00infobox
SYNCRIPBgeehand1.00infobox
SYNCRIPBgeemaxillary prominence1.00infobox
SYNCRIPBgeeepiblast1.00infobox
SYNCRIPBgeeabdominal wall1.00infobox
SYNCRIPBioGPSMore reference expression data1.00infobox
SYNCRIPChr.Chromosome 6 (human)1.00infobox
SYNCRIPChr.Chromosome 9 (mouse)1.00infobox
SYNCRIPDatabasesNCBI: entry; OMA: entry1.00infobox
SYNCRIPEnd85,644,063 bp1.00infobox
SYNCRIPEnd88,364,627 bp1.00infobox
SYNCRIPEnsemblENSG000001353161.00infobox
SYNCRIPEntrez104921.00infobox

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