SHFM1

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Interactions

Interact BRCA2

2 related topics

Overview

Protein Gene

2 related topics

Key facts & relationships

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Aliases: SEM1, DSS1, ECD, SHFD1, SHSF1, Shfdg1, SHFM1, split hand/foot malformation (ectrodactyly) type 1
Available structures: Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1IYJ, 1MIU, 1MJE, 3T5X
Band: 6|6 A1
Bgee: mandibular prominence · maxillary prominence · endothelial cell of lymphatic vessel · medullary collecting duct · body of femur
BioGPS: More reference expression data
Chr.: Chromosome 6 (mouse)

Topics to explore

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Overview

Interactions

Interact Protein-protein interaction
BRCA2

Advanced semantic analysis

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Map overview Semantic statistics

Nodes7

Edges6

Triples77

Avg. degree1.71

Density0.285714

Components1

How this topic connects Entity context

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SHFM1

Top relations

Gene ontology · 33

SHFM1 → anaphase-promoting complex-dependent catabolic process, antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent, cytosol, double-strand break repair via homologous recombination, Fc-epsilon receptor signaling pathway, integrator complex, interleukin-1-mediated signaling pathway, MAPK cascade, mRNA export from nucleus, negative regulation of canonical Wnt signaling pathway, negative regulation of G2/M transition of mitotic cell cycle, NIK/NF-kappaB signaling, nucleoplasm, positive regulation of canonical Wnt signaling pathway, post-translational protein modification, proteasome assembly, proteasome complex, proteasome regulatory particle, lid subcomplex, proteasome-mediated ubiquitin-dependent protein catabolic process, protein binding

Bgee · 10

SHFM1 → abdominal wall, body of femur, dermis, endothelial cell of lymphatic vessel, hair follicle, mandibular prominence, maxillary prominence, medial ganglionic eminence, medullary collecting duct, primitive streak

RNA expression pattern · 10

related to Function · 4

SHFM1 → BRCA2, In, It, The

Aliases · 1

SHFM1 → SEM1, DSS1, ECD, SHFD1, SHSF1, Shfdg1, SHFM1, split hand/foot malformation (ectrodactyly) type 1

Available structures · 1

SHFM1 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1IYJ, 1MIU, 1MJE, 3T5X

Band · 1

SHFM1 → 6|6 A1

BioGPS · 1

SHFM1 → More reference expression data

Chr. · 1

SHFM1 → Chromosome 6 (mouse)

Databases · 1

SHFM1 → NCBI: entry; OMA: entry

Important terminology Word statistics

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Important terminology

gene bp chr chromosome protein sem1 mouse band split hand foot malformation proteasome complex dss1 function search location 578 663

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
SHFM1	Aliases	SEM1, DSS1, ECD, SHFD1, SHSF1, Shfdg1, SHFM1, split hand/foot malformation (ectrodactyly) type 1	1.00	infobox
SHFM1	Available structures	Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1IYJ, 1MIU, 1MJE, 3T5X	1.00	infobox
SHFM1	Band	6\|6 A1	1.00	infobox
SHFM1	Bgee	mandibular prominence	1.00	infobox
SHFM1	Bgee	maxillary prominence	1.00	infobox
SHFM1	Bgee	endothelial cell of lymphatic vessel	1.00	infobox
SHFM1	Bgee	medullary collecting duct	1.00	infobox
SHFM1	Bgee	body of femur	1.00	infobox
SHFM1	Bgee	medial ganglionic eminence	1.00	infobox
SHFM1	Bgee	hair follicle	1.00	infobox
SHFM1	Bgee	primitive streak	1.00	infobox
SHFM1	Bgee	abdominal wall	1.00	infobox
SHFM1	Bgee	dermis	1.00	infobox
SHFM1	BioGPS	More reference expression data	1.00	infobox
SHFM1	Chr.	Chromosome 6 (mouse)	1.00	infobox
SHFM1	Databases	NCBI: entry; OMA: entry	1.00	infobox
SHFM1	End	6,578,663 bp	1.00	infobox
SHFM1	Ensembl	ENSG00000127922	1.00	infobox
SHFM1	Entrez	7979	1.00	infobox
SHFM1	External IDs	OMIM: 601285; MGI: 109238; GeneCards: SEM1	1.00	infobox
SHFM1	Gene location (Mouse)	Gene location (Mouse)Chr.Chromosome 6 (mouse)Band6\|6 A1Start6,557,294 bpEnd6,578,663 bp	1.00	infobox
SHFM1	Gene ontology	protein binding	1.00	infobox
SHFM1	Gene ontology	integrator complex	1.00	infobox
SHFM1	Gene ontology	proteasome complex	1.00	infobox
SHFM1	Gene ontology	proteasome regulatory particle, lid subcomplex	1.00	infobox
SHFM1	Gene ontology	nucleoplasm	1.00	infobox
SHFM1	Gene ontology	cytosol	1.00	infobox
SHFM1	Gene ontology	mRNA export from nucleus	1.00	infobox
SHFM1	Gene ontology	proteasome assembly	1.00	infobox
SHFM1	Gene ontology	protein deubiquitination	1.00	infobox

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