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PDLIM1: Interactions & Overview

PDZ and LIM domain protein 1 is a protein that in humans is encoded by the PDLIM1 gene.

Language: English [EN]
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PDLIM1 topic overview

The analysis highlights Interactions and Overview as prominent areas in the source structure around PDLIM1.

Related topics
7
Source areas
2
Connected nodes
9
Extracted relationships
85
Concept neighborhoods
5
Bridge connections
9

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 5 topics
Overview · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
PDLIM1, CLIM1, CLP-36, CLP36, HEL-S-112, hCLIM1, PDZ and LIM domain 1
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1X62, 2PKT
Band
10q23.33 · 19|19 C3
Bgee
lower lobe of lung · nasal epithelium · mucosa of urinary bladder · right lung · pericardium
BioGPS
More reference expression data
Chr.
Chromosome 10 (human) · Chromosome 19 (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How PDLIM1 connects Entity context

The extracted context around PDLIM1 shows recurring relationship patterns in the source. For example, PDLIM1 → colon, duodenum, esophagus, genital tubercle, gingival epithelium, ileum, jejunum, lens, lower lobe of lung, mucosa of urinary bladder, nasal epithelium, olfactory zone of nasal mucosa, palpebral conjunctiva, pericardium, placenta, right lung, upper lobe of left lung, upper lobe of lung, uterus, zygote Another extracted example is PDLIM1 → actin binding, actin cytoskeleton organization, cadherin binding involved in cell-cell adhesion, cell-cell adhesion, cytoplasm, cytoskeleton, development of the heart, filamentous actin, focal adhesion, metal ion binding, muscle alpha-actinin binding, muscle structure development, positive regulation of nucleic acid-templated transcription, regulation of transcription, DNA-templated, response to hypoxia, response to oxidative stress, stress fiber, transcription coactivator activity, transcription regulator complex, Z discdkac. Use these groups to spot repeated connection types before inspecting the individual relationships.

PDLIM1

Top relations

Bgee · 20
PDLIM1 → colon, duodenum, esophagus, genital tubercle, gingival epithelium, ileum, jejunum, lens, lower lobe of lung, mucosa of urinary bladder, nasal epithelium, olfactory zone of nasal mucosa, palpebral conjunctiva, pericardium, placenta, right lung, upper lobe of left lung, upper lobe of lung, uterus, zygote
Gene ontology · 20
PDLIM1 → actin binding, actin cytoskeleton organization, cadherin binding involved in cell-cell adhesion, cell-cell adhesion, cytoplasm, cytoskeleton, development of the heart, filamentous actin, focal adhesion, metal ion binding, muscle alpha-actinin binding, muscle structure development, positive regulation of nucleic acid-templated transcription, regulation of transcription, DNA-templated, response to hypoxia, response to oxidative stress, stress fiber, transcription coactivator activity, transcription regulator complex, Z discdkac
RNA expression pattern · 20
PDLIM1 → colon, duodenum, esophagus, genital tubercle, gingival epithelium, ileum, jejunum, lens, lower lobe of lung, mucosa of urinary bladder, nasal epithelium, olfactory zone of nasal mucosa, palpebral conjunctiva, pericardium, placenta, right lung, upper lobe of left lung, upper lobe of lung, uterus, zygote
Band · 2
PDLIM1 → 10q23.33, 19|19 C3
Chr. · 2
PDLIM1 → Chromosome 10 (human), Chromosome 19 (mouse)
End · 2
PDLIM1 → 40,260,286 bp, 95,291,012 bp
related to Interactions · 2
PDLIM1 → Actinin, Estrogen
Aliases · 1
PDLIM1 → PDLIM1, CLIM1, CLP-36, CLP36, HEL-S-112, hCLIM1, PDZ and LIM domain 1
Available structures · 1
PDLIM1 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1X62, 2PKT
BioGPS · 1
PDLIM1 → More reference expression data

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

bp chr human band gene chromosome 10 location protein mouse pdz lim domain search 291 012 end 95 19 260

PDLIM1 relationships Subject–Predicate–Object triples

TTTA extracted 85 structured relationships around PDLIM1. Examples in this analysis include PDLIM1 → Aliases → PDLIM1, CLIM1, CLP-36, CLP36, HEL-S-112, hCLIM1, PDZ and LIM domain 1 and PDLIM1 → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1X62, 2PKT. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
PDLIM1AliasesPDLIM1, CLIM1, CLP-36, CLP36, HEL-S-112, hCLIM1, PDZ and LIM domain 11.00infobox
PDLIM1Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1X62, 2PKT1.00infobox
PDLIM1Band10q23.331.00infobox
PDLIM1Band19|19 C31.00infobox
PDLIM1Bgeelower lobe of lung1.00infobox
PDLIM1Bgeenasal epithelium1.00infobox
PDLIM1Bgeemucosa of urinary bladder1.00infobox
PDLIM1Bgeeright lung1.00infobox
PDLIM1Bgeepericardium1.00infobox
PDLIM1Bgeegingival epithelium1.00infobox
PDLIM1Bgeeupper lobe of lung1.00infobox
PDLIM1Bgeeolfactory zone of nasal mucosa1.00infobox
PDLIM1Bgeepalpebral conjunctiva1.00infobox
PDLIM1Bgeeupper lobe of left lung1.00infobox
PDLIM1Bgeeileum1.00infobox
PDLIM1Bgeeplacenta1.00infobox
PDLIM1Bgeejejunum1.00infobox
PDLIM1Bgeeduodenum1.00infobox
PDLIM1Bgeeesophagus1.00infobox
PDLIM1Bgeecolon1.00infobox
PDLIM1Bgeeuterus1.00infobox
PDLIM1Bgeezygote1.00infobox
PDLIM1Bgeelens1.00infobox
PDLIM1Bgeegenital tubercle1.00infobox
PDLIM1BioGPSMore reference expression data1.00infobox
PDLIM1Chr.Chromosome 10 (human)1.00infobox
PDLIM1Chr.Chromosome 19 (mouse)1.00infobox
PDLIM1DatabasesNCBI: entry; OMA: entry1.00infobox
PDLIM1End95,291,012 bp1.00infobox
PDLIM1End40,260,286 bp1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around PDLIM1 bring nearby vocabulary together. In this analysis, examples include Gene, Pdz and Protein. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • gene
    • Location
    • Pdlim1
    • Chromosome
    • Human
    • Bp
    • Chr
    • End
    • Lim
    • Mouse
    • Pdz
    • Protein
    • Search
  • PDLIM1
    • Gene
    • Pdz
    • Protein
    • Search
    • Location
    • Chromosome
    • Human
    • Bp
    • Chr
    • Interactions
    • Reading
    • References
  • pdlim1
    • Gene
    • Pdz
    • Protein
    • Search
    • Location
    • Chromosome
    • Human
    • Bp
    • Chr
    • Interactions
    • Reading
    • References
  • interactions
    • Reading
    • References
    • Lim
    • Pdz
    • Search
    • Location
    • Pdlim1
    • Chromosome
    • Human
    • Bp
    • Chr
  • protein
    • Search

Connections between topic areas Semantic bridges

For PDLIM1, one of the stronger structural bridges in this analysis connects PDLIM1 with Interactions. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
PDLIM1Interactions · splits 4 ⟂ 6
PDLIM1Overview · splits 7 ⟂ 3

Map overview Semantic statistics

PDLIM1

Nodes10
Edges9
Triples85
Avg. degree1.8
Density0.2
Components1

Source & methodology

TTTA analyzes the structure around PDLIM1 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — PDLIM1 · EN edition · Analysis: TopicsToTalkAbout

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