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OB-fold

In molecular biology, the OB-fold (oligonucleotide/oligosaccharide-binding fold) is a small protein structural motif observed in different proteins that bind oligonucleotides or oligosaccharides. It was originally identified in 1993 in four unrelated proteins: staphylococcal nuclease, anticodon binding domain of aspartyl-tRNA synthetase, and the…

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Explore the main themes, entities and connections around OB-fold. Start with the topic map, then use the sections below for research and deeper semantic analysis.

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Key facts & relationships

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AlphaFold
IPR012340
Available protein structures:
IPR012340
ECOD
2
InterPro
IPR012340
PDB
IPR012340
Pfam clan
CL0021

Topics to explore

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Overview

Structure

Function

Examples of proteins containing this domain

Relationship to SH3 domains

Evolution and distribution

Advanced semantic analysis

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Map overview Semantic statistics

OB-fold

Nodes34
Edges33
Triples28
Avg. degree1.94
Density0.058824
Components1

How this topic connects Entity context

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OB-fold

Top relations

related to Evolution and distribution · 6
OB-fold → In, Its, OB-folds, SH3, The OB-fold, They
related to Relationship to SH3 domains · 5
OB-fold → OB-folds, PXXP-containing, SH3, Src, This
related to Function · 4
OB-fold → DNA, In, OB-folds, RNA
related to External links · 3
OB-fold → InterPro, IPR012340, Nucleic
related to Structure · 2
OB-fold → The, The OB-fold
AlphaFold · 1
OB-fold → IPR012340
Available protein structures: · 1
OB-fold → IPR012340
ECOD · 1
OB-fold → 2
InterPro · 1
OB-fold → IPR012340
PDB · 1
OB-fold → IPR012340

Important terminology Word statistics

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Important terminology

proteins binding structure domains structural protein β-sheet barrel ob-folds fold motif sh3 dna functions different many genome β-barrel domain oligosaccharides

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
OB-foldAlphaFoldIPR0123401.00infobox
OB-foldAvailable protein structures:IPR0123401.00infobox
OB-foldECOD21.00infobox
OB-foldInterProIPR0123401.00infobox
OB-foldPDBIPR0123401.00infobox
OB-foldPfam clanCL00211.00infobox
OB-foldSymbolOB-fold1.00infobox
OB-foldrelated to Evolution and distributionThe OB-fold0.60section
OB-foldrelated to Evolution and distributionThey0.60section
OB-foldrelated to Evolution and distributionIn0.60section
OB-foldrelated to Evolution and distributionIts0.60section
OB-foldrelated to Evolution and distributionSH30.60section

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    Min side: 3
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