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Interactome

In molecular biology, an interactome is the whole set of molecular interactions in a particular cell. The term specifically refers to physical interactions among molecules (such as those among proteins, also known as protein–protein interactions (PPIs); or between small molecules and proteins.) but can also describe sets of indirect interactions among…

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Studied interactomes

27 related topics

Computational methods to study interactomes

18 related topics

Molecular interaction networks

8 related topics

Genetic interaction networks

4 related topics

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Overview

Molecular interaction networks

Size

Genetic interaction networks

Interactomics

Experimental methods to map interactomes

Computational methods to study interactomes

Studied interactomes

Network properties

Evolution

Interactome web servers

Interactome visualization tools

Interactome databases

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Map overview Semantic statistics

Interactome

Nodes101
Edges100
Triples148
Avg. degree1.98
Density0.019802
Components1

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Interactome

Top relations

related to Predicted interactomes · 17
Interactome → As, Brassica, Field, Homo, Human, Interactomes, Maize, Oryza, Poplar, Populus, PPIs, Rice, SARS-CoV-2, Solanum, While, Xanthomonas, Zea
has method · 14
Interactome → Affinity, Both, First, However, HTP, Once, PPI, PPIs, Second, Such, The, While, Y2H, Yeast
related to Molecular interaction networks · 14
Interactome → Another, DNA, Even, For, In, Molecular, Most, Neighbors, PIN, PPI, Similarly, Sirt, Sirt-1, Whenever
related to Bacterial interactomes · 10
Interactome → Among, AP/MS, B2H, However, In, Mycoplasma, Relatively, The, The Mycobacterium, Y2H
related to Interactome databases · 9
Interactome → Archived, BioGRID, Calderone, IntAct, Nature Methods, PMID, S2CID, The Molecular Interaction DatabaseInteractome, Wayback Machine
related to Predicting PPIs · 9
Interactome → Bacillus, Here, However, In, Nevertheless, Other, PPIs, Some, Using
related to Genetic interaction networks · 8
Interactome → For, From, Genes, In, Some, Such, The, Using
related to Hubs · 7
Interactome → AP/MS, Consistent, Han, Highly, In, Note, Party
related to Protein function prediction · 7
Interactome → Although, For, Protein, The, This, Thus, YbeB
related to Eukaryotic interactomes · 6
Interactome → HTP, Saccharomyces, Schizosaccharomyces, Species, There, While

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Important terminology

interactions proteins protein interactomes interaction networks network methods genes may among study also using yeast hubs molecular functional data used

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Interactomeis awhole set of molecular interactions in a particular cell0.90text
Interactomeis anetwork involving Sirt-1 and its directly interacting proteins where as second order interactome illustrates interactions up to second order of neighbors0.90text
Interactomeis aprotein0.90text
neural networks or food websinstance ofthey should not be confused with other networks0.80text
gene conservationinstance ofFrom this model genetic interactions can be observed at multiple scales which will assist in the study of concepts0.80text
cellular colocalizationinstance ofthereby creating unbiased complete networks of interaction with many mistakes.Some methods use machine learning to distinguish how interacting protein pairs differ from non-inte…0.80text
gene co-expressioninstance ofthereby creating unbiased complete networks of interaction with many mistakes.Some methods use machine learning to distinguish how interacting protein pairs differ from non-inte…0.80text
how closely located on a DNA are the genes that encode the two proteinsinstance ofthereby creating unbiased complete networks of interaction with many mistakes.Some methods use machine learning to distinguish how interacting protein pairs differ from non-inte…0.80text
and so oninstance ofthereby creating unbiased complete networks of interaction with many mistakes.Some methods use machine learning to distinguish how interacting protein pairs differ from non-inte…0.80text
protein complexesinstance ofParty hubs also connect proteins within functional modules0.80text
Interactomehas methodThe0.60section
Interactomehas methodPPI0.60section

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