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FokI

The restriction endonuclease Fok1, naturally found in Flavobacterium okeanokoites, is a bacterial type IIS restriction endonuclease consisting of an N-terminal DNA-binding domain and a non sequence-specific DNA cleavage domain at the C-terminal. Once the protein is bound to duplex DNA via its DNA-binding domain at the 5'-GGATG-3' recognition site, the…

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AlphaFold
IPR015334 · PF09254
Available protein structures:
IPR015334 · PF09254
InterPro
IPR015334
PDB
IPR015334 PF09254 (ECOD; PDBsum)
Pfam
PF09254
Pfam clan
CL0415

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Map overview Semantic statistics

FokI

Nodes19
Edges18
Triples11
Avg. degree1.89
Density0.105263
Components1

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FokI

Top relations

AlphaFold · 2
FokI → IPR015334, PF09254
Available protein structures: · 2
FokI → IPR015334, PF09254
InterPro · 1
FokI → IPR015334
PDB · 1
FokI → IPR015334 PF09254 (ECOD; PDBsum)
Pfam · 1
FokI → PF09254
Pfam clan · 1
FokI → CL0415
SCOP2 · 1
FokI → 2fok / SCOPe / SUPFAM
Symbol · 1
FokI → Endonuc-Fok1_C

Important terminology Word statistics

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Important terminology

domain dna dna-binding cleavage endonuclease protein recognition two fok1 bound site cut restriction nuclease nucleotide see also flavobacterium n-terminal c-terminal

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
FokIAlphaFoldIPR0153341.00infobox
FokIAlphaFoldPF092541.00infobox
FokIAvailable protein structures:IPR0153341.00infobox
FokIAvailable protein structures:PF092541.00infobox
FokIInterProIPR0153341.00infobox
FokIPDBIPR015334 PF09254 (ECOD; PDBsum)1.00infobox
FokIPfamPF092541.00infobox
FokIPfam clanCL04151.00infobox
FokISCOP22fok / SCOPe / SUPFAM1.00infobox
FokISymbolEndonuc-Fok1_C1.00infobox
the zinc fingerinstance ofafter combination with a variety of DNA-binding domains0.80text

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