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APEX1: Interactions, Aging & Overview

DNA-(apurinic or apyrimidinic site) lyase is an enzyme that in humans is encoded by the APEX1 gene.

Language: English [EN]
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APEX1 topic overview

The analysis highlights Interactions, Aging and Overview as prominent areas in the source structure around APEX1.

Related topics
14
Source areas
3
Connected nodes
17
Extracted relationships
140
Concept neighborhoods
12
Bridge connections
17

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Overview · 7 topics
Interactions · 4 topics
Aging · 3 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

3.1.11.2
Aliases
APEX1, APE, APE1, APEN, APEX, APX, HAP1, REF1, apurinic/apyrimidinic endodeoxyribonuclease 1
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1BIX, 1CQH, 4LND, 4QH9, 5DFF, 4QHD, 1E9N, 3U8U, 5DFI, 1HD7, 5DG0, 5DFJ, 4QHE, 5DFH, 1DE9, 4IEM, 2ISI, 1DE8,…
Band
14q11.2 · 14 C1|14 26.3 cM
Bgee
ganglionic eminence · ventricular zone · islet of Langerhans · right adrenal gland · right adrenal cortex
BioGPS
More reference expression data

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Interactions

Aging

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How APEX1 connects Entity context

The extracted context around APEX1 shows recurring relationship patterns in the source. For example, APEX1 → 3'-5' exonuclease activity, ageing, base-excision repair, cell redox homeostasis, cellular response to cAMP, cellular response to DNA damage stimulus, cellular response to hydrogen peroxide, cellular response to organonitrogen compound, cellular response to peptide hormone stimulus, centrosome, chromatin DNA binding, class I DNA-(apurinic or apyrimidinic site) endonuclease activity, class III/IV DNA-(apurinic or apyrimidinic site) endonuclease activity, cytoplasm, damaged DNA binding, DNA binding, DNA demethylation, DNA recombination, DNA repair, DNA-(apurinic or apyrimidinic site) endonuclease activity Another extracted example is APEX1 → abdominal wall, condyle, embryo, epiblast, external carotid artery, gallbladder, ganglionic eminence, internal carotid artery, islet of Langerhans, left adrenal cortex, left ovary, mandibular prominence, maxillary prominence, medial ganglionic eminence, primitive streak, rectum, right adrenal cortex, right adrenal gland, right ovary, ventricular zone. Use these groups to spot repeated connection types before inspecting the individual relationships.

APEX1

Top relations

Gene ontology · 66
APEX1 → 3'-5' exonuclease activity, ageing, base-excision repair, cell redox homeostasis, cellular response to cAMP, cellular response to DNA damage stimulus, cellular response to hydrogen peroxide, cellular response to organonitrogen compound, cellular response to peptide hormone stimulus, centrosome, chromatin DNA binding, class I DNA-(apurinic or apyrimidinic site) endonuclease activity, class III/IV DNA-(apurinic or apyrimidinic site) endonuclease activity, cytoplasm, damaged DNA binding, DNA binding, DNA demethylation, DNA recombination, DNA repair, DNA-(apurinic or apyrimidinic site) endonuclease activity
Bgee · 20
APEX1 → abdominal wall, condyle, embryo, epiblast, external carotid artery, gallbladder, ganglionic eminence, internal carotid artery, islet of Langerhans, left adrenal cortex, left ovary, mandibular prominence, maxillary prominence, medial ganglionic eminence, primitive streak, rectum, right adrenal cortex, right adrenal gland, right ovary, ventricular zone
RNA expression pattern · 20
APEX1 → abdominal wall, condyle, embryo, epiblast, external carotid artery, gallbladder, ganglionic eminence, internal carotid artery, islet of Langerhans, left adrenal cortex, left ovary, mandibular prominence, maxillary prominence, medial ganglionic eminence, primitive streak, rectum, right adrenal cortex, right adrenal gland, right ovary, ventricular zone
related to Aging · 3
APEX1 → Deficiency, DNA, This
related to Interactions · 3
APEX1 → Flap, MUTYH, XRCC1
Band · 2
APEX1 → 14 C1|14 26.3 cM, 14q11.2
Chr. · 2
APEX1 → Chromosome 14 (human), Chromosome 14 (mouse)
End · 2
APEX1 → 20,457,772 bp, 51,164,596 bp
related to External links · 2
APEX1 → Human APEX1, UCSC Genome Browser
3.1.11.2 · 1
APEX1 → ↗

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

gene human bp ap dna chr band apurinic apyrimidinic chromosome 14 sites location site repair external endonuclease aging humans cells

APEX1 relationships Subject–Predicate–Object triples

TTTA extracted 140 structured relationships around APEX1. Examples in this analysis include APEX1 → 3.1.11.2 → ↗ and APEX1 → Aliases → APEX1, APE, APE1, APEN, APEX, APX, HAP1, REF1, apurinic/apyrimidinic endodeoxyribonuclease 1. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
APEX13.1.11.21.00infobox
APEX1AliasesAPEX1, APE, APE1, APEN, APEX, APX, HAP1, REF1, apurinic/apyrimidinic endodeoxyribonuclease 11.00infobox
APEX1Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1BIX, 1CQH, 4LND, 4QH9, 5DFF, 4QHD, 1E9N, 3U8U, 5DFI, 1HD7, 5DG0, 5DFJ, 4QHE, 5DFH, 1DE9, 4IEM, 2ISI, 1DE8,…1.00infobox
APEX1Band14q11.21.00infobox
APEX1Band14 C1|14 26.3 cM1.00infobox
APEX1Bgeeganglionic eminence1.00infobox
APEX1Bgeeventricular zone1.00infobox
APEX1Bgeeislet of Langerhans1.00infobox
APEX1Bgeeright adrenal gland1.00infobox
APEX1Bgeeright adrenal cortex1.00infobox
APEX1Bgeeleft ovary1.00infobox
APEX1Bgeeright ovary1.00infobox
APEX1Bgeeleft adrenal cortex1.00infobox
APEX1Bgeegallbladder1.00infobox
APEX1Bgeerectum1.00infobox
APEX1Bgeeprimitive streak1.00infobox
APEX1Bgeeinternal carotid artery1.00infobox
APEX1Bgeeexternal carotid artery1.00infobox
APEX1Bgeeabdominal wall1.00infobox
APEX1Bgeeepiblast1.00infobox
APEX1Bgeecondyle1.00infobox
APEX1Bgeemaxillary prominence1.00infobox
APEX1Bgeemandibular prominence1.00infobox
APEX1Bgeemedial ganglionic eminence1.00infobox
APEX1Bgeeembryo1.00infobox
APEX1BioGPSMore reference expression data1.00infobox
APEX1Chr.Chromosome 14 (human)1.00infobox
APEX1Chr.Chromosome 14 (mouse)1.00infobox
APEX1DatabasesNCBI: entry; OMA: entry1.00infobox
APEX1End20,457,772 bp1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around APEX1 bring nearby vocabulary together. In this analysis, examples include Gene, Human and Apurinic. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • APEX1
    • Gene
    • Human
    • Apurinic
    • Apyrimidinic
    • Location
    • Activity
    • Ape1
    • Apen
    • Dna-
    • Endodeoxyribonuclease
    • Endonuclease
    • Enzyme
  • apex1
    • Gene
    • Human
    • Apurinic
    • Apyrimidinic
    • Location
    • Activity
    • Ape1
    • Apen
    • Dna-
    • Endodeoxyribonuclease
    • Endonuclease
    • Enzyme
  • gene
    • Human
    • Location
    • Chromosome
    • Bp
    • Chr
    • Activity
    • Ape1
    • Apen
    • Endodeoxyribonuclease
    • Endonuclease
    • External
    • Hap1
  • apurinic/apyrimidinic (ap) sites
    • Apyrimidinic
    • Activity
    • Dna-
    • Endodeoxyribonuclease
    • Enzyme
    • External
    • Hydrolysis
    • Lyase
    • Search
    • Specific
    • Apex1
    • Site
  • dna glycosylases
    • Damage
    • Hydrolysis
    • Specific
    • Aging
    • Sites
    • Activity
    • Base
    • Class
    • Dna-
    • Endodeoxyribonuclease
    • Endonuclease
    • External
  • dna replication
    • Damage
    • Hydrolysis
    • Specific
    • Aging
    • Sites
    • Activity
    • Base
    • Class
    • Dna-
    • Endodeoxyribonuclease
    • Endonuclease
    • External
  • base excision repair
    • Class
    • Phosphodiester
    • Process
    • Base
    • Repair
    • Site
    • Activity
    • Dna-
    • Endodeoxyribonuclease
    • Endonuclease
    • External
    • Hydrolysis
  • ap endonuclease
    • Sites
    • Activity
    • Endodeoxyribonuclease
    • External
    • Hap1
    • Human
    • Hydrolysis
    • Lyase
    • Mouse
    • Phosphodiester
    • Process
    • Protein

Connections between topic areas Semantic bridges

For APEX1, one of the stronger structural bridges in this analysis connects APEX1 with Overview. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
APEX1Overview · splits 10 ⟂ 8
APEX1Interactions · splits 13 ⟂ 5
APEX1Aging · splits 14 ⟂ 4

Map overview Semantic statistics

APEX1

Nodes18
Edges17
Triples140
Avg. degree1.89
Density0.111111
Components1

Source & methodology

TTTA analyzes the structure around APEX1 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions, Aging & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — APEX1 · EN edition · Analysis: TopicsToTalkAbout

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