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USP5: Interactions & Overview

Ubiquitin specific peptidase 5 is an enzyme that in humans is encoded by the USP5 gene.

Language: English [EN]
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USP5 topic overview

The analysis highlights Interactions and Overview as prominent areas in the source structure around USP5.

Related topics
4
Source areas
2
Connected nodes
6
Extracted relationships
83
Concept neighborhoods
5
Bridge connections
6

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 2 topics
Overview · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

3.4.19.12
Aliases
USP5, ISOT, ubiquitin specific peptidase 5
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2DAG, 2DAK, 2G43, 2G45, 3IHP
Band
12p13.31 · 6 F2|6 59.17 cM
Bgee
prefrontal cortex · left testis · right testis · right frontal lobe · right adrenal gland
BioGPS
More reference expression data

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How USP5 connects Entity context

The extracted context around USP5 shows recurring relationship patterns in the source. For example, USP5 → Brodmann area 9, dentate gyrus of hippocampal formation granule cell, entorhinal cortex, gastrocnemius muscle, lateral nuclear group of thalamus, left adrenal gland, left testis, lip, medulla oblongata, otic vesicle, perirhinal cortex, prefrontal cortex, primary visual cortex, right adrenal cortex, right adrenal gland, right frontal lobe, right testis, spermatocyte, superior frontal gyrus, ventricular zone Another extracted example is USP5 → cysteine-type endopeptidase activity, cysteine-type peptidase activity, cytosol, hydrolase activity, lysosome, metal ion binding, peptidase activity, positive regulation of proteasomal ubiquitin-dependent protein catabolic process, protein binding, protein deubiquitination, protein K48-linked deubiquitination, protein ubiquitination, proteolysis, thiol-dependent deubiquitinase, ubiquitin binding, ubiquitin-dependent protein catabolic process, zinc ion binding. Use these groups to spot repeated connection types before inspecting the individual relationships.

USP5

Top relations

Bgee · 20
USP5 → Brodmann area 9, dentate gyrus of hippocampal formation granule cell, entorhinal cortex, gastrocnemius muscle, lateral nuclear group of thalamus, left adrenal gland, left testis, lip, medulla oblongata, otic vesicle, perirhinal cortex, prefrontal cortex, primary visual cortex, right adrenal cortex, right adrenal gland, right frontal lobe, right testis, spermatocyte, superior frontal gyrus, ventricular zone
RNA expression pattern · 20
USP5 → Brodmann area 9, dentate gyrus of hippocampal formation granule cell, entorhinal cortex, gastrocnemius muscle, lateral nuclear group of thalamus, left adrenal gland, left testis, lip, medulla oblongata, otic vesicle, perirhinal cortex, prefrontal cortex, primary visual cortex, right adrenal cortex, right adrenal gland, right frontal lobe, right testis, spermatocyte, superior frontal gyrus, ventricular zone
Gene ontology · 17
USP5 → cysteine-type endopeptidase activity, cysteine-type peptidase activity, cytosol, hydrolase activity, lysosome, metal ion binding, peptidase activity, positive regulation of proteasomal ubiquitin-dependent protein catabolic process, protein binding, protein deubiquitination, protein K48-linked deubiquitination, protein ubiquitination, proteolysis, thiol-dependent deubiquitinase, ubiquitin binding, ubiquitin-dependent protein catabolic process, zinc ion binding
Band · 2
USP5 → 12p13.31, 6 F2|6 59.17 cM
Chr. · 2
USP5 → Chromosome 12 (human), Chromosome 6 (mouse)
End · 2
USP5 → 124,806,447 bp, 6,866,632 bp
3.4.19.12 · 1
USP5 → ↗
Aliases · 1
USP5 → USP5, ISOT, ubiquitin specific peptidase 5
Available structures · 1
USP5 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2DAG, 2DAK, 2G43, 2G45, 3IHP
BioGPS · 1
USP5 → More reference expression data

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

bp chr human band gene 12 chromosome ubiquitin peptidase location enzyme mouse specific search activity 866 632 end f2 59

USP5 relationships Subject–Predicate–Object triples

TTTA extracted 83 structured relationships around USP5. Examples in this analysis include USP5 → 3.4.19.12 → ↗ and USP5 → Aliases → USP5, ISOT, ubiquitin specific peptidase 5. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
USP53.4.19.121.00infobox
USP5AliasesUSP5, ISOT, ubiquitin specific peptidase 51.00infobox
USP5Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2DAG, 2DAK, 2G43, 2G45, 3IHP1.00infobox
USP5Band12p13.311.00infobox
USP5Band6 F2|6 59.17 cM1.00infobox
USP5Bgeeprefrontal cortex1.00infobox
USP5Bgeeleft testis1.00infobox
USP5Bgeeright testis1.00infobox
USP5Bgeeright frontal lobe1.00infobox
USP5Bgeeright adrenal gland1.00infobox
USP5Bgeeright adrenal cortex1.00infobox
USP5BgeeBrodmann area 91.00infobox
USP5Bgeeleft adrenal gland1.00infobox
USP5Bgeelateral nuclear group of thalamus1.00infobox
USP5Bgeegastrocnemius muscle1.00infobox
USP5Bgeespermatocyte1.00infobox
USP5Bgeedentate gyrus of hippocampal formation granule cell1.00infobox
USP5Bgeesuperior frontal gyrus1.00infobox
USP5Bgeeprimary visual cortex1.00infobox
USP5Bgeeperirhinal cortex1.00infobox
USP5Bgeeentorhinal cortex1.00infobox
USP5Bgeeventricular zone1.00infobox
USP5Bgeeotic vesicle1.00infobox
USP5Bgeelip1.00infobox
USP5Bgeemedulla oblongata1.00infobox
USP5BioGPSMore reference expression data1.00infobox
USP5Chr.Chromosome 12 (human)1.00infobox
USP5Chr.Chromosome 6 (mouse)1.00infobox
USP5DatabasesNCBI: entry; OMA: entry1.00infobox
USP5End6,866,632 bp1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around USP5 bring nearby vocabulary together. In this analysis, examples include Peptidase, Ubiquitin and Gene. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • USP5
    • Peptidase
    • Ubiquitin
    • Gene
    • Activity
    • Enzyme
    • Search
    • Specific
    • Location
    • Chromosome
    • Human
    • Bp
    • Chr
  • usp5
    • Peptidase
    • Ubiquitin
    • Gene
    • Activity
    • Enzyme
    • Search
    • Specific
    • Location
    • Chromosome
    • Human
    • Bp
    • Chr
  • gene
    • Location
    • Peptidase
    • Ubiquitin
    • Usp5
    • Chromosome
    • Human
    • Activity
    • Bp
    • Chr
    • End
    • F2
    • Mouse
  • enzyme
    • Specific
    • Peptidase
    • Ubiquitin
    • Usp5
    • Encoded
    • Gene
    • Humans
    • Interactions
    • Reading
    • References
    • Activity
    • Search
  • interactions
    • Reading
    • References
    • Activity
    • Search
    • Specific
    • Location
    • Peptidase
    • Ubiquitin
    • Usp5
    • Chromosome
    • Human
    • Bp

Connections between topic areas Semantic bridges

For USP5, one of the stronger structural bridges in this analysis connects USP5 with Overview. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
USP5Overview · splits 4 ⟂ 3
USP5Interactions · splits 4 ⟂ 3

Map overview Semantic statistics

USP5

Nodes7
Edges6
Triples83
Avg. degree1.71
Density0.285714
Components1

Source & methodology

TTTA analyzes the structure around USP5 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — USP5 · EN edition · Analysis: TopicsToTalkAbout

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