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TREX1: Clinical relevance, Homology directed DNA repair & Function

Three prime repair exonuclease 1 is an enzyme that in humans is encoded by the TREX1 gene.

Language: English [EN]
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TREX1 topic overview

The analysis highlights Clinical relevance, Homology directed DNA repair and Function as prominent areas in the source structure around TREX1.

Related topics
22
Source areas
4
Connected nodes
26
Extracted relationships
165
Concept neighborhoods
18
Bridge connections
26

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Clinical relevance · 10 topics
Homology directed DNA repair · 6 topics
Function · 4 topics
Overview · 2 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

3.1.11.2
Aliases
TREX1, AGS1, CRV, DRN3, HERNS, three prime repair exonuclease 1, RVCLS
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2IOC, 2O4G, 2O4I, 2OA8, 3B6O, 3B6P, 3MXI, 3MXJ, 3MXM, 3U3Y, 3U6F, 4YNQ
Band
3p21.31 · 9|9 F2
Bgee
olfactory zone of nasal mucosa · granulocyte · monocyte · spleen · skin of abdomen
BioGPS
More reference expression data

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Function

Clinical relevance

Homology directed DNA repair

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How TREX1 connects Entity context

The extracted context around TREX1 shows recurring relationship patterns in the source. For example, TREX1 → 3'-5' exonuclease activity, 3'-5'-exodeoxyribonuclease activity, activation of immune response, adaptive immune response, adenyl deoxyribonucleotide binding, apoptotic cell clearance, atrial cardiac muscle tissue development, blood vessel development, CD86 biosynthetic process, cellular response to DNA damage stimulus, cellular response to gamma radiation, cellular response to hydroxyurea, cellular response to interferon-beta, cellular response to organic substance, cellular response to oxidative stress, cellular response to reactive oxygen species, cellular response to type I interferon, cellular response to UV, cytoplasm, cytosol Another extracted example is TREX1 → adrenal gland, anterior pituitary, blood, bone marrow, granulocyte, lens, minor salivary glands, monocyte, muscle of thigh, muscle tissue, olfactory zone of nasal mucosa, quadriceps femoris muscle, salivary gland, skin of abdomen, skin of leg, spleen, urinary bladder, white adipose tissue. Use these groups to spot repeated connection types before inspecting the individual relationships.

TREX1

Top relations

Gene ontology · 92
TREX1 → 3'-5' exonuclease activity, 3'-5'-exodeoxyribonuclease activity, activation of immune response, adaptive immune response, adenyl deoxyribonucleotide binding, apoptotic cell clearance, atrial cardiac muscle tissue development, blood vessel development, CD86 biosynthetic process, cellular response to DNA damage stimulus, cellular response to gamma radiation, cellular response to hydroxyurea, cellular response to interferon-beta, cellular response to organic substance, cellular response to oxidative stress, cellular response to reactive oxygen species, cellular response to type I interferon, cellular response to UV, cytoplasm, cytosol
Bgee · 18
TREX1 → adrenal gland, anterior pituitary, blood, bone marrow, granulocyte, lens, minor salivary glands, monocyte, muscle of thigh, muscle tissue, olfactory zone of nasal mucosa, quadriceps femoris muscle, salivary gland, skin of abdomen, skin of leg, spleen, urinary bladder, white adipose tissue
RNA expression pattern · 18
TREX1 → adrenal gland, anterior pituitary, blood, bone marrow, granulocyte, lens, minor salivary glands, monocyte, muscle of thigh, muscle tissue, olfactory zone of nasal mucosa, quadriceps femoris muscle, salivary gland, skin of abdomen, skin of leg, spleen, urinary bladder, white adipose tissue
related to Clinical relevance · 8
TREX1 → COVID-19, HIV, Missense, Mutations, SARS-CoV-2, The, The TREX1, This
related to Homology directed DNA repair · 4
TREX1 → DNA, Dominant C-terminal TREX1, Drosophila, Such TREX1
Band · 2
TREX1 → 3p21.31, 9|9 F2
Chr. · 2
TREX1 → Chromosome 3 (human), Chromosome 9 (mouse)
End · 2
TREX1 → 108,888,802 bp, 48,467,645 bp
3.1.11.2 · 1
TREX1 → ↗
Aliases · 1
TREX1 → TREX1, AGS1, CRV, DRN3, HERNS, three prime repair exonuclease 1, RVCLS

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

gene dna exonuclease human bp repair chr band chromosome mutations location function humans chilblain cytoplasm enzyme mouse nucleic process three

TREX1 relationships Subject–Predicate–Object triples

TTTA extracted 165 structured relationships around TREX1. Examples in this analysis include TREX1 → 3.1.11.2 → ↗ and TREX1 → Aliases → TREX1, AGS1, CRV, DRN3, HERNS, three prime repair exonuclease 1, RVCLS. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
TREX13.1.11.21.00infobox
TREX1AliasesTREX1, AGS1, CRV, DRN3, HERNS, three prime repair exonuclease 1, RVCLS1.00infobox
TREX1Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2IOC, 2O4G, 2O4I, 2OA8, 3B6O, 3B6P, 3MXI, 3MXJ, 3MXM, 3U3Y, 3U6F, 4YNQ1.00infobox
TREX1Band3p21.311.00infobox
TREX1Band9|9 F21.00infobox
TREX1Bgeeolfactory zone of nasal mucosa1.00infobox
TREX1Bgeegranulocyte1.00infobox
TREX1Bgeemonocyte1.00infobox
TREX1Bgeespleen1.00infobox
TREX1Bgeeskin of abdomen1.00infobox
TREX1Bgeeskin of leg1.00infobox
TREX1Bgeeanterior pituitary1.00infobox
TREX1Bgeeblood1.00infobox
TREX1Bgeesalivary gland1.00infobox
TREX1Bgeeminor salivary glands1.00infobox
TREX1Bgeelens1.00infobox
TREX1Bgeeurinary bladder1.00infobox
TREX1Bgeequadriceps femoris muscle1.00infobox
TREX1Bgeeadrenal gland1.00infobox
TREX1Bgeebone marrow1.00infobox
TREX1Bgeemuscle tissue1.00infobox
TREX1Bgeemuscle of thigh1.00infobox
TREX1Bgeewhite adipose tissue1.00infobox
TREX1BioGPSMore reference expression data1.00infobox
TREX1Chr.Chromosome 3 (human)1.00infobox
TREX1Chr.Chromosome 9 (mouse)1.00infobox
TREX1DatabasesNCBI: entry; OMA: entry1.00infobox
TREX1End48,467,645 bp1.00infobox
TREX1End108,888,802 bp1.00infobox
TREX1EnsemblENSG000002136891.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around TREX1 bring nearby vocabulary together. In this analysis, examples include Variants, Vasculopathy and Prime. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • gene
    • Trex1
    • Location
    • Chromosome
    • Mutations
    • Bp
    • Chr
    • Human
    • Repair
    • 3p21
    • Activity
    • End
    • Mouse
  • exonuclease
    • Function
    • Dna
    • Human
    • Repair
    • Activity
    • Enzyme
    • Prime
    • Search
    • Three
    • Location
    • Trex1
    • Chromosome
  • dna
    • Exonuclease
    • Function
    • Trex1
    • Human
    • Repair
    • Activity
    • Search
    • Cytoplasm
    • Location
    • Chromosome
    • Bp
    • Chr
  • nucleotide excision repair
    • Exonuclease
    • Activity
    • Enzyme
    • Search
    • Three
    • Dna
    • Function
    • Humans
    • Location
    • Process
    • Trex1
    • Chromosome
  • homology-directed dna repair
    • Exonuclease
    • Function
    • Activity
    • Enzyme
    • Search
    • Three
    • Trex1
    • Dna
    • Human
    • Humans
    • Location
    • Process
  • dna damage
    • Exonuclease
    • Function
    • Trex1
    • Human
    • Repair
    • Activity
    • Search
    • Cytoplasm
    • Location
    • Chromosome
    • Bp
    • Chr
  • homology directed dna repair
    • Exonuclease
    • Function
    • Activity
    • Enzyme
    • Search
    • Three
    • Trex1
    • Dna
    • Human
    • Humans
    • Location
    • Process
  • function
    • Activity
    • Search
    • Human
    • Location
    • Chromosome
    • Bp
    • Chr
    • External
    • Repair
    • End
    • Interferon
    • Mouse

Connections between topic areas Semantic bridges

For TREX1, one of the stronger structural bridges in this analysis connects TREX1 with Clinical relevance. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
TREX1Clinical relevance · splits 16 ⟂ 11
TREX1Homology directed DNA repair · splits 20 ⟂ 7
TREX1Function · splits 22 ⟂ 5
TREX1Overview · splits 24 ⟂ 3

Map overview Semantic statistics

TREX1

Nodes27
Edges26
Triples165
Avg. degree1.93
Density0.074074
Components1

Source & methodology

TTTA analyzes the structure around TREX1 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Clinical relevance, Homology directed DNA repair & Function, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — TREX1 · EN edition · Analysis: TopicsToTalkAbout

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