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Spatial transcriptomics

Spatial transcriptomics, or spatially resolved transcriptomics, is a method that captures positional context of transcriptional activity within intact tissue. The historical precursor to spatial transcriptomics is in situ hybridization, where the modernized omics terminology refers to the measurement of all the mRNA in a cell rather than select RNA…

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Overview

History

Applications

Microdissection

Fluorescent in situ hybridization

In situ sequencing

In situ capture

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Map overview Semantic statistics

Spatial transcriptomics

Nodes37
Edges36
Triples63
Avg. degree1.95
Density0.054054
Components1

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Spatial transcriptomics

Top relations

related to history · 27
Spatial transcriptomics → Betsey Williams, Chicago, DNA, Doyle, Eolas, FISH, Gall, Genomic Activity, George Mason University, George Michaels, Harvard, Illinois, Joseph, Laser Capture Microdissection, Mary-Lou Pardue, Maurice Pescitelli, MERFISH, Michael Doyle, Michael Eisen's, Microdisecction
related to Spatial transcriptomics · 15
Spatial transcriptomics → As, DNA, From, Frozen, Genomics, In, It, Next, Reverse, RNA, Science, Ståhl, The, This, Visium
related to 10X Genomics Visium · 8
Spatial transcriptomics → Each, Genomics Visium, It, On, The, Tissue, Visium Spatial Gene Expression, Within
has application · 6
Spatial transcriptomics → Below, Defining, Spatial, The, These, This
related to HDST · 6
Spatial transcriptomics → HDST, High-Definition Spatial Transcriptomics, Once, Slide-seq, The, This

Important terminology Word statistics

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Important terminology

spatial tissue rna cells sequencing method situ hybridization cell capture mrna probe probes transcriptomics dna single cdna using expression sequence

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
brain tissueinstance ofeven in thick specimens0.80text
Spatial transcriptomicshas applicationDefining0.60section
Spatial transcriptomicshas applicationThis0.60section
Spatial transcriptomicshas applicationThese0.60section
Spatial transcriptomicshas applicationThe0.60section
Spatial transcriptomicshas applicationSpatial0.60section
Spatial transcriptomicshas applicationBelow0.60section
Spatial transcriptomicsrelated to 10X Genomics VisiumThe0.60section
Spatial transcriptomicsrelated to 10X Genomics VisiumGenomics Visium0.60section
Spatial transcriptomicsrelated to 10X Genomics VisiumIt0.60section
Spatial transcriptomicsrelated to 10X Genomics VisiumWithin0.60section
Spatial transcriptomicsrelated to 10X Genomics VisiumVisium Spatial Gene Expression0.60section

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