SOX17

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Explore the main themes, entities and connections around SOX17. Start with the topic map, then use the sections below for research and deeper semantic analysis.

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Structure

Endoderm CTCF

2 related topics

Function

TGF beta signaling Canonical WNT signaling

2 related topics

Overview

Protein Gene

2 related topics

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases: SOX17, VUR3, SRY-box 17, SRY-box transcription factor 17
Available structures: Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2YUL, 4A3N
Band: 8q11.23 · 1 A1|1 1.65 cM
Bgee: endothelial cell · pericardium · endometrium · right uterine tube · vena cava
BioGPS: n/a
Chr.: Chromosome 8 (human) · Chromosome 1 (mouse)

Topics to explore

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Overview

Structure

Function

TGF beta signaling TGF beta signaling pathway
Canonical WNT signaling Wnt signaling pathway

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

Map overview Semantic statistics

Nodes10

Edges9

Triples154

Avg. degree1.8

Density0.2

Components1

How this topic connects Entity context

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SOX17

Top relations

Gene ontology · 69

SOX17 → angiogenesis, beta-catenin binding, canonical Wnt signaling pathway, cardiac cell fate determination, cardiogenic plate morphogenesis, cell differentiation, cell migration involved in gastrulation, cellular response to leukemia inhibitory factor, common bile duct development, DNA binding, DNA-binding transcription activator activity, RNA polymerase II-specific, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II-specific, embryonic foregut morphogenesis, embryonic heart tube development, embryonic heart tube morphogenesis, embryonic organ development, endocardial cell differentiation, endocardium formation, endoderm development

Bgee · 20

SOX17 → carotid body, endometrium, endothelial cell, external carotid artery, gastrula, gonad, internal carotid artery, left lung lobe, left uterine tube, muscle of thigh, pericardium, primitive streak, right lung, right lung lobe, right uterine tube, subcutaneous adipose tissue, substantia nigra, tibial nerve, uterus, vena cava

RNA expression pattern · 20

related to Function · 13

SOX17 → Activin, Besides, CTCF-boundary, Especially, G1, In Xenopus, SMAD2/3, Tcf, TGF, The, WNT, Wnt/β-catenin, Wnt3a

related to Structure · 9

SOX17 → Approximately, CTCF, DMR, DNA, PCGs, The DMR, The SOX17, TIG, TIGs

Band · 2

SOX17 → 1 A1|1 1.65 cM, 8q11.23

Chr. · 2

SOX17 → Chromosome 1 (mouse), Chromosome 8 (human)

End · 2

SOX17 → 4,567,577 bp, 54,460,892 bp

Aliases · 1

SOX17 → SOX17, VUR3, SRY-box 17, SRY-box transcription factor 17

Available structures · 1

SOX17 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2YUL, 4A3N

Important terminology Word statistics

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Important terminology

gene bp chr human band chromosome protein transcription endodermal location mouse expression cell wnt sry-box 17 function definitive encoded factor

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
SOX17	Aliases	SOX17, VUR3, SRY-box 17, SRY-box transcription factor 17	1.00	infobox
SOX17	Available structures	Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2YUL, 4A3N	1.00	infobox
SOX17	Band	8q11.23	1.00	infobox
SOX17	Band	1 A1\|1 1.65 cM	1.00	infobox
SOX17	Bgee	endothelial cell	1.00	infobox
SOX17	Bgee	pericardium	1.00	infobox
SOX17	Bgee	endometrium	1.00	infobox
SOX17	Bgee	right uterine tube	1.00	infobox
SOX17	Bgee	vena cava	1.00	infobox
SOX17	Bgee	gonad	1.00	infobox
SOX17	Bgee	left uterine tube	1.00	infobox
SOX17	Bgee	tibial nerve	1.00	infobox
SOX17	Bgee	subcutaneous adipose tissue	1.00	infobox
SOX17	Bgee	muscle of thigh	1.00	infobox
SOX17	Bgee	left lung lobe	1.00	infobox
SOX17	Bgee	gastrula	1.00	infobox
SOX17	Bgee	external carotid artery	1.00	infobox
SOX17	Bgee	primitive streak	1.00	infobox
SOX17	Bgee	internal carotid artery	1.00	infobox
SOX17	Bgee	right lung	1.00	infobox
SOX17	Bgee	right lung lobe	1.00	infobox
SOX17	Bgee	uterus	1.00	infobox
SOX17	Bgee	carotid body	1.00	infobox
SOX17	Bgee	substantia nigra	1.00	infobox
SOX17	BioGPS	n/a	1.00	infobox
SOX17	Chr.	Chromosome 8 (human)	1.00	infobox
SOX17	Chr.	Chromosome 1 (mouse)	1.00	infobox
SOX17	Databases	NCBI: entry; OMA: entry	1.00	infobox
SOX17	End	54,460,892 bp	1.00	infobox
SOX17	End	4,567,577 bp	1.00	infobox

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