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Sequence logo

In bioinformatics, a sequence logo is a graphical representation of the sequence conservation of nucleotides (in a strand of DNA/RNA) or amino acids (in protein sequences). A sequence logo is created from a collection of aligned sequences and depicts the consensus sequence and diversity of the sequences. Sequence logos are frequently used to depict…

Logo creation, Consensus logo & Extensions

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Explore the main themes, entities and connections around Sequence logo. Start with the topic map, then use the sections below for research and deeper semantic analysis.

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Overview

Logo creation

Consensus logo

Extensions

Advanced semantic analysis

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Map overview Semantic statistics

Sequence logo

Nodes25
Edges24
Triples29
Avg. degree1.92
Density0.08
Components1

How this topic connects Entity context

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Sequence logo

Top relations

related to Advantages and drawbacks · 6
Sequence logo → As, Consensus, Hence, Rich Text Format, That, The
related to Logo creation · 6
Sequence logo → Different, DNA, RNA, Sequence, The, To
related to Extensions · 5
Sequence logo → Hidden Markov, HMM, HMMs, In, Pfam
related to External links · 5
Sequence logo → EprintWhat, Erill, How, Making Sequence Logos, Recommendations
related to Consensus logo · 4
Sequence logo → DNA/RNA, However, Instead, Like
is a · 1
Sequence logo → graphical representation of the sequence conservation of nucleotides
related to overview · 1
Sequence logo → The

Important terminology Word statistics

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Important terminology

sequence logo information consensus sequences logos position dna conservation alignment frequency letters amino aligned used sites rna relative height content

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
Sequence logois agraphical representation of the sequence conservation of nucleotides0.90text
protein-binding sites in DNA or functional units in proteinsinstance ofSequence logos are frequently used to depict sequence characteristics0.80text
Sequence logorelated to Advantages and drawbacksThe0.60section
Sequence logorelated to Advantages and drawbacksRich Text Format0.60section
Sequence logorelated to Advantages and drawbacksAs0.60section
Sequence logorelated to Advantages and drawbacksHence0.60section
Sequence logorelated to Advantages and drawbacksThat0.60section
Sequence logorelated to Advantages and drawbacksConsensus0.60section
Sequence logorelated to Consensus logoLike0.60section
Sequence logorelated to Consensus logoDNA/RNA0.60section
Sequence logorelated to Consensus logoHowever0.60section
Sequence logorelated to Consensus logoInstead0.60section

Related concept clusters Concept neighborhoods

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    Connections between topic areas Semantic bridges

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    Min side: 3
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