SAM (file format)

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Explore the main themes, entities and connections around SAM (file format). Start with the topic map, then use the sections below for research and deeper semantic analysis.

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Overview

Format Biological sequences aligned Reference sequence Heng Li 1000 Genomes Project

13 related topics

Format

Binary Alignment Map SAMtools

2 related topics

Description

FASTQ format Phred-scaled base

2 related topics

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Developed by: Heng Li · Bob Handsaker · Alec Wysoker · Tim Fennell · Jue Ruan
Extended from: Tab-separated values
Type of format: Bioinformatics

Topics to explore

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Overview

Format File format
Biological sequences aligned Sequence alignment
Reference sequence RefSeq
Heng Li
1000 Genomes Project
BLAT BLAT (bioinformatics)
University of Utah
BLAST BLAST (biotechnology)
Nucleotide
Next generation sequencing
Genome Analysis Toolkit (GATK) Genome Analysis Toolkit (GATK)?action=edit&redlink=1
Broad Institute
Wellcome Sanger Institute

Format

Description

FASTQ format
Phred-scaled base Phred quality score

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

Map overview Semantic statistics

Nodes21

Edges20

Triples14

Avg. degree1.9

Density0.095238

Components1

How this topic connects Entity context

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SAM (file format)

Top relations

Developed by · 10

SAM (file format) → 1000 Genomes Project, Alec Wysoker, Bob Handsaker, Gabor Marth, Gonçalo Abecasis, Heng Li, Jue Ruan, Nils Homer, Richard M. Durbin, Tim Fennell

Extended from · 1

SAM (file format) → Tab-separated values

Filename extension · 1

SAM (file format) → .mw-parser-output .monospaced{font-family:monospace,monospace} .sam

Type of format · 1

SAM (file format) → Bioinformatics

Website · 1

SAM (file format) → samtools.github.io/hts-specs/

Important terminology Word statistics

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

format alignment sam template sequence read field quality reference next 1000 genomes project rname base developed must flag one assumptions

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
SAM (file format)	Developed by	Heng Li	1.00	infobox
SAM (file format)	Developed by	Bob Handsaker	1.00	infobox
SAM (file format)	Developed by	Alec Wysoker	1.00	infobox
SAM (file format)	Developed by	Tim Fennell	1.00	infobox
SAM (file format)	Developed by	Jue Ruan	1.00	infobox
SAM (file format)	Developed by	Nils Homer	1.00	infobox
SAM (file format)	Developed by	Gabor Marth	1.00	infobox
SAM (file format)	Developed by	Gonçalo Abecasis	1.00	infobox
SAM (file format)	Developed by	Richard M. Durbin	1.00	infobox
SAM (file format)	Developed by	1000 Genomes Project	1.00	infobox
SAM (file format)	Extended from	Tab-separated values	1.00	infobox
SAM (file format)	Filename extension	.mw-parser-output .monospaced{font-family:monospace,monospace} .sam	1.00	infobox
SAM (file format)	Type of format	Bioinformatics	1.00	infobox
SAM (file format)	Website	samtools.github.io/hts-specs/	1.00	infobox

Related concept clusters Concept neighborhoods

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Connections between topic areas Semantic bridges

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Min side: 3