RefSeq

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RefSeq topic overview

The analysis highlights Products, Technology and Regions as prominent areas in the source structure around RefSeq.

Related topics: 42
Source areas: 2
Connected nodes: 46
Extracted relationships: 30
Concept neighborhoods: 18
Bridge connections: 46

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

RefSeq Projects · 28 topics

Overview · 14 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Description: curated non-redundant sequence database of genomes.
Primary citation: Pruitt KD & al. (2005)
Research center: National Center for Biotechnology Information

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Database Sequence database
Open access Open access (publishing)
Nucleotide
DNA
RNA
Protein
National Center for Biotechnology Information
GenBank
Viruses Virus
Bacteria
Eukaryotes Eukaryote
Model organism
Organisms Organism
Species

RefSeq Projects

Consensus CDS Consensus CDS Project
Protein-coding regions Coding region
Enhancers Enhancer (genetics)
Silencers Silencer (genetics)
DNase I hypersensitive regions DNase I hypersensitive site
DNA replication origins Origin of replication
MRNA Messenger RNA
Ribosomal RNA
Phylogenetic Phylogenetics
Barcoding analysis DNA barcoding
Archaea
Fungi Fungus
Entrez
BLAST BLAST (biotechnology)
Animals Animal
Plants Plant
Protists Protist
Influenza virus Orthomyxoviridae
Ebolavirus
MERS coronavirus MERS-CoV
Zika virus
Evolutionary conservation Conserved sequence
Alternative splicing
Comparative genomics
EMBL European Molecular Biology Laboratory
EBI European Bioinformatics Institute
Ensembl Ensembl genome database project
GENCODE

Sources

Public domain material Copyright status of works by the federal government of the United States

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How RefSeq connects Entity context

The extracted context around RefSeq shows recurring relationship patterns in the source. For example, RefSeq → Chapter, Database, For, Table, The, The Reference Sequence Another extracted example is RefSeq → CCDS, Consensus CDS, EMBL-EBI, NCBI, Several, This. Use these groups to spot repeated connection types before inspecting the individual relationships.

Top relations

related to RefSeq categories · 6

RefSeq → Chapter, Database, For, Table, The, The Reference Sequence

related to RefSeq Projects · 6

RefSeq → CCDS, Consensus CDS, EMBL-EBI, NCBI, Several, This

related to External links · 5

RefSeq → Name, RefSeqGenBank, TPA, UniProt, What's

related to Statistics · 4

RefSeq → According, IDs, July, The

Description · 1

RefSeq → curated non-redundant sequence database of genomes.

Primary citation · 1

RefSeq → Pruitt KD & al. (2005)

Research center · 1

RefSeq → National Center for Biotechnology Information

Website · 1

RefSeq → https://www.ncbi.nlm.nih.gov/refseq/

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

project sequences genbank database transcripts dna ncbi sequence rna protein organisms genomic gene data available national center biotechnology information set

RefSeq relationships Subject–Predicate–Object triples

TTTA extracted 30 structured relationships around RefSeq. Examples in this analysis include RefSeq → Description → curated non-redundant sequence database of genomes. and RefSeq → Primary citation → Pruitt KD & al. (2005). The table shows each extracted connection, where it came from and its confidence.

Subject	Predicate	Object	Confidence	Src
RefSeq	Description	curated non-redundant sequence database of genomes.	1.00	infobox
RefSeq	Primary citation	Pruitt KD & al. (2005)	1.00	infobox
RefSeq	Research center	National Center for Biotechnology Information	1.00	infobox
RefSeq	Website	https://www.ncbi.nlm.nih.gov/refseq/	1.00	infobox
EMBL-EBI	instance of	often in collaboration with research centers	0.80	text
influenza virus	instance of	It is a specific resource of sequence data processing pipelines and analysis tools for display and retrieval of sequences from several viral groups	0.80	text
ebolavirus	instance of	It is a specific resource of sequence data processing pipelines and analysis tools for display and retrieval of sequences from several viral groups	0.80	text
MERS coronavirus or Zika virus	instance of	It is a specific resource of sequence data processing pipelines and analysis tools for display and retrieval of sequences from several viral groups	0.80	text
comparative genomics or exchange of clinical variant data.MANE	instance of	this complexity is problematic for studies	0.80	text
RefSeq	related to External links	RefSeqGenBank	0.60	section
RefSeq	related to External links	TPA	0.60	section
RefSeq	related to External links	UniProt	0.60	section

Related concept clusters Concept neighborhoods

The concept neighborhoods around RefSeq bring nearby vocabulary together. In this analysis, examples include Sequence, Transcripts and Aims. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

RefSeq
- Sequence
- Transcripts
- Aims
- Categories
- Data
- Gene
- Genbank
- Organism
- Species
- Genomes
- Proteins
- Regions
refseq
- Sequence
- Transcripts
- Aims
- Categories
- Data
- Gene
- Genbank
- Organism
- Species
- Genomes
- Proteins
- Regions
refseq projects
- Sequence
- Transcripts
- Aims
- Categories
- Data
- Gene
- Genbank
- Organism
- Species
- Genomes
- Proteins
- Regions
database
- Sequence
- Curated
- Categories
- Genomes
- Reference
- Ncbi
- Refseq
- Genbank
- Species
- Also
- Available
- Biotechnology
dna
- Protein
- Rna
- Gene
- Bacteria
- Major
- Organism
- Refseq
- Viruses
- Aims
- Organisms
- Proteins
- Reference
dna replication origins
- Protein
- Rna
- Gene
- Bacteria
- Major
- Organism
- Refseq
- Viruses
- Aims
- Organisms
- Proteins
- Reference
genbank
- Species
- Includes
- Ncbi
- Sequences
- Refseq
- Major
- Organism
- Also
- Genomes
- Information
- National
- Organisms
species
- Genbank
- Major
- Organism
- Available
- Genomes
- Includes
- Organisms
- Data
- Ncbi
- Database
- Sequence
- Refseq

Connections between topic areas Semantic bridges

For RefSeq, one of the stronger structural bridges in this analysis connects RefSeq with RefSeq Projects. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3

RefSeq — RefSeq Projects · splits 18 ⟂ 29

RefSeq — Overview · splits 32 ⟂ 15

Map overview Semantic statistics

RefSeq

Nodes47

Edges46

Triples30

Avg. degree1.96

Density0.042553

Components1

Source & methodology

TTTA analyzes the structure around RefSeq to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Products, Technology & Regions, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — RefSeq · EN edition · Analysis: TopicsToTalkAbout