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RNF111: Interactions, Function & Overview

E3 ubiquitin-protein ligase Arkadia is an enzyme that in humans is encoded by the RNF111 gene.

Language: English [EN]
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RNF111 topic overview

The analysis highlights Interactions, Function and Overview as prominent areas in the source structure around RNF111.

Related topics
6
Source areas
3
Connected nodes
9
Extracted relationships
96
Concept neighborhoods
7
Bridge connections
9

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 3 topics
Overview · 2 topics
Function · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

2.3.2.27
Aliases
RNF111, ARK, ring finger protein 111, hRNF111
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2KIZ
Band
15q22.1-q22.2 · 9 D|9 39.53 cM
Bgee
secondary oocyte · endothelial cell · monocyte · ganglionic eminence · Epithelium of choroid plexus
BioGPS
More reference expression data

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Function

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How RNF111 connects Entity context

The extracted context around RNF111 shows recurring relationship patterns in the source. For example, RNF111 → cellular response to DNA damage stimulus, cytoplasm, cytosol, DNA repair, global genome nucleotide-excision repair, metal ion binding, multicellular organism development, nucleoplasm, nucleus, pattern specification process, PML body, positive regulation of protein ubiquitination, positive regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, positive regulation of transforming growth factor beta receptor signaling pathway, proteasome-mediated ubiquitin-dependent protein catabolic process, protein binding, protein polyubiquitination, protein ubiquitination, protein-containing complex Another extracted example is RNF111 → aortic valve, blood, cumulus cell, endothelial cell, Epithelium of choroid plexus, epithelium of colon, ganglionic eminence, granulocyte, lymph node, monocyte, parotid gland, pineal gland, primitive streak, secondary oocyte, stromal cell of endometrium, sural nerve, tonsil, ventricular zone, zygote. Use these groups to spot repeated connection types before inspecting the individual relationships.

RNF111

Top relations

Gene ontology · 26
RNF111 → cellular response to DNA damage stimulus, cytoplasm, cytosol, DNA repair, global genome nucleotide-excision repair, metal ion binding, multicellular organism development, nucleoplasm, nucleus, pattern specification process, PML body, positive regulation of protein ubiquitination, positive regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, positive regulation of transforming growth factor beta receptor signaling pathway, proteasome-mediated ubiquitin-dependent protein catabolic process, protein binding, protein polyubiquitination, protein ubiquitination, protein-containing complex
Bgee · 19
RNF111 → aortic valve, blood, cumulus cell, endothelial cell, Epithelium of choroid plexus, epithelium of colon, ganglionic eminence, granulocyte, lymph node, monocyte, parotid gland, pineal gland, primitive streak, secondary oocyte, stromal cell of endometrium, sural nerve, tonsil, ventricular zone, zygote
RNA expression pattern · 19
RNF111 → aortic valve, blood, cumulus cell, endothelial cell, Epithelium of choroid plexus, epithelium of colon, ganglionic eminence, granulocyte, lymph node, monocyte, parotid gland, pineal gland, primitive streak, secondary oocyte, stromal cell of endometrium, sural nerve, tonsil, ventricular zone, zygote
related to Function · 6
RNF111 → DNA, Nodal, RING, Rnf111/arkadia, TGF, The
Band · 2
RNF111 → 15q22.1-q22.2, 9 D|9 39.53 cM
Chr. · 2
RNF111 → Chromosome 15 (human), Chromosome 9 (mouse)
End · 2
RNF111 → 59,097,419 bp, 70,411,007 bp
2.3.2.27 · 1
RNF111 → ↗
Aliases · 1
RNF111 → RNF111, ARK, ring finger protein 111, hRNF111
Available structures · 1
RNF111 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2KIZ

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

bp gene chr human band chromosome 15 mouse location protein enzyme ligase function arkadia encoded search activity 1-q22 097 419

RNF111 relationships Subject–Predicate–Object triples

TTTA extracted 96 structured relationships around RNF111. Examples in this analysis include RNF111 → 2.3.2.27 → ↗ and RNF111 → Aliases → RNF111, ARK, ring finger protein 111, hRNF111. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
RNF1112.3.2.271.00infobox
RNF111AliasesRNF111, ARK, ring finger protein 111, hRNF1111.00infobox
RNF111Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2KIZ1.00infobox
RNF111Band15q22.1-q22.21.00infobox
RNF111Band9 D|9 39.53 cM1.00infobox
RNF111Bgeesecondary oocyte1.00infobox
RNF111Bgeeendothelial cell1.00infobox
RNF111Bgeemonocyte1.00infobox
RNF111Bgeeganglionic eminence1.00infobox
RNF111BgeeEpithelium of choroid plexus1.00infobox
RNF111Bgeeventricular zone1.00infobox
RNF111Bgeeepithelium of colon1.00infobox
RNF111Bgeestromal cell of endometrium1.00infobox
RNF111Bgeetonsil1.00infobox
RNF111Bgeesural nerve1.00infobox
RNF111Bgeezygote1.00infobox
RNF111Bgeecumulus cell1.00infobox
RNF111Bgeegranulocyte1.00infobox
RNF111Bgeeprimitive streak1.00infobox
RNF111Bgeeblood1.00infobox
RNF111Bgeeparotid gland1.00infobox
RNF111Bgeepineal gland1.00infobox
RNF111Bgeelymph node1.00infobox
RNF111Bgeeaortic valve1.00infobox
RNF111BioGPSMore reference expression data1.00infobox
RNF111Chr.Chromosome 15 (human)1.00infobox
RNF111Chr.Chromosome 9 (mouse)1.00infobox
RNF111DatabasesNCBI: entry; OMA: entry1.00infobox
RNF111End59,097,419 bp1.00infobox
RNF111End70,411,007 bp1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around RNF111 bring nearby vocabulary together. In this analysis, examples include Gene, Activity and Development. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • RNF111
    • Gene
    • Activity
    • Development
    • Factor
    • Finger
    • Function
    • Growth
    • Interact
    • Interactions
    • Protein
    • Ring
    • Search
  • rnf111
    • Gene
    • Activity
    • Development
    • Factor
    • Finger
    • Function
    • Growth
    • Interact
    • Interactions
    • Protein
    • Ring
    • Search
  • gene
    • Rnf111
    • Location
    • Mouse
    • Chromosome
    • Human
    • Bp
    • Chr
    • 1-q22
    • Activity
    • Development
    • End
    • Factor
  • function
    • Activity
    • Finger
    • Interactions
    • Protein
    • Ring
    • Search
    • Location
    • Chromosome
    • Human
    • Bp
    • Chr
    • Gene
  • enzyme
    • Humans
    • Ubiquitin-protein
    • Gene
    • Rnf111
    • 1-q22
    • Activity
    • Encoded
    • Finger
    • Function
    • Interactions
    • Ligase
    • Protein
  • interactions
    • Protein
    • Ring
    • Search
    • Location
    • Human
    • Rnf111
    • Development
    • End
    • Factor
    • Growth
    • Ligase
    • Signaling
  • interact
    • Shown
    • Rnf111
    • Signaling
    • Transforming
    • Mouse

Connections between topic areas Semantic bridges

For RNF111, one of the stronger structural bridges in this analysis connects RNF111 with Interactions. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
RNF111Interactions · splits 6 ⟂ 4
RNF111Overview · splits 7 ⟂ 3

Map overview Semantic statistics

RNF111

Nodes10
Edges9
Triples96
Avg. degree1.8
Density0.2
Components1

Source & methodology

TTTA analyzes the structure around RNF111 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions, Function & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — RNF111 · EN edition · Analysis: TopicsToTalkAbout

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