RNF111

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Explore the main themes, entities and connections around RNF111. Start with the topic map, then use the sections below for research and deeper semantic analysis.

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Interactions

Interact Mothers against decapentaplegic homolog 7 Mothers against decapentaplegic homolog 3

3 related topics

Function

Mesoderm

1 related topics

Overview

Enzyme Gene

2 related topics

Key facts & relationships

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2.3.2.27: ↗
Aliases: RNF111, ARK, ring finger protein 111, hRNF111
Available structures: Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2KIZ
Band: 15q22.1-q22.2 · 9 D|9 39.53 cM
Bgee: secondary oocyte · endothelial cell · monocyte · ganglionic eminence · Epithelium of choroid plexus
BioGPS: More reference expression data

Topics to explore

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Overview

Function

Mesoderm

Interactions

Interact Protein-protein interaction
Mothers against decapentaplegic homolog 7
Mothers against decapentaplegic homolog 3

Advanced semantic analysis

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Map overview Semantic statistics

Nodes10

Edges9

Triples96

Avg. degree1.8

Density0.2

Components1

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RNF111

Top relations

Gene ontology · 26

RNF111 → cellular response to DNA damage stimulus, cytoplasm, cytosol, DNA repair, global genome nucleotide-excision repair, metal ion binding, multicellular organism development, nucleoplasm, nucleus, pattern specification process, PML body, positive regulation of protein ubiquitination, positive regulation of transcription by RNA polymerase II, positive regulation of transcription, DNA-templated, positive regulation of transforming growth factor beta receptor signaling pathway, proteasome-mediated ubiquitin-dependent protein catabolic process, protein binding, protein polyubiquitination, protein ubiquitination, protein-containing complex

Bgee · 19

RNF111 → aortic valve, blood, cumulus cell, endothelial cell, Epithelium of choroid plexus, epithelium of colon, ganglionic eminence, granulocyte, lymph node, monocyte, parotid gland, pineal gland, primitive streak, secondary oocyte, stromal cell of endometrium, sural nerve, tonsil, ventricular zone, zygote

RNA expression pattern · 19

related to Function · 6

RNF111 → DNA, Nodal, RING, Rnf111/arkadia, TGF, The

Band · 2

RNF111 → 15q22.1-q22.2, 9 D|9 39.53 cM

Chr. · 2

RNF111 → Chromosome 15 (human), Chromosome 9 (mouse)

End · 2

RNF111 → 59,097,419 bp, 70,411,007 bp

2.3.2.27 · 1

RNF111 → ↗

Aliases · 1

RNF111 → RNF111, ARK, ring finger protein 111, hRNF111

Available structures · 1

RNF111 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2KIZ

Important terminology Word statistics

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Important terminology

bp gene chr human band chromosome 15 mouse location protein enzyme ligase function arkadia encoded search activity 1-q22 097 419

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
RNF111	2.3.2.27	↗	1.00	infobox
RNF111	Aliases	RNF111, ARK, ring finger protein 111, hRNF111	1.00	infobox
RNF111	Available structures	Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2KIZ	1.00	infobox
RNF111	Band	15q22.1-q22.2	1.00	infobox
RNF111	Band	9 D\|9 39.53 cM	1.00	infobox
RNF111	Bgee	secondary oocyte	1.00	infobox
RNF111	Bgee	endothelial cell	1.00	infobox
RNF111	Bgee	monocyte	1.00	infobox
RNF111	Bgee	ganglionic eminence	1.00	infobox
RNF111	Bgee	Epithelium of choroid plexus	1.00	infobox
RNF111	Bgee	ventricular zone	1.00	infobox
RNF111	Bgee	epithelium of colon	1.00	infobox
RNF111	Bgee	stromal cell of endometrium	1.00	infobox
RNF111	Bgee	tonsil	1.00	infobox
RNF111	Bgee	sural nerve	1.00	infobox
RNF111	Bgee	zygote	1.00	infobox
RNF111	Bgee	cumulus cell	1.00	infobox
RNF111	Bgee	granulocyte	1.00	infobox
RNF111	Bgee	primitive streak	1.00	infobox
RNF111	Bgee	blood	1.00	infobox
RNF111	Bgee	parotid gland	1.00	infobox
RNF111	Bgee	pineal gland	1.00	infobox
RNF111	Bgee	lymph node	1.00	infobox
RNF111	Bgee	aortic valve	1.00	infobox
RNF111	BioGPS	More reference expression data	1.00	infobox
RNF111	Chr.	Chromosome 15 (human)	1.00	infobox
RNF111	Chr.	Chromosome 9 (mouse)	1.00	infobox
RNF111	Databases	NCBI: entry; OMA: entry	1.00	infobox
RNF111	End	59,097,419 bp	1.00	infobox
RNF111	End	70,411,007 bp	1.00	infobox

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