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Pho4: Regions & Overview

Pho4 is a protein with a basic helix-loop-helix (bHLH) transcription factor. It is found in S. cerevisiae and other yeasts. It functions as a transcription factor to regulate phosphate responsive genes located in yeast cells. The Pho4 protein homodimer is able to do this by binding to DNA sequences containing the bHLH binding site 5'-CACGTG-3'. This…

Language: English [EN]
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Pho4 topic overview

The analysis highlights Regions and Overview as prominent areas in the source structure around Pho4.

Related topics
6
Source areas
1
Connected nodes
7
Extracted relationships
49
Concept neighborhoods
7
Bridge connections
7

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Overview · 6 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Alt. symbols
YFR034C
Domains
InterPro
NCBI gene
850594
PDB
1a0a
RefSeq
NP_116692
Search for
Search forStructuresSwiss-modelDomainsInterPro

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How Pho4 connects Entity context

The extracted context around Pho4 shows recurring relationship patterns in the source. For example, Pho4 → DNA, H1, H2, Helical, Molecules, PHO5, PHO81, PHO84, The DNA-binding, The PHO4, Yoshida Another extracted example is Pho4 → CDK, In, PHO2, PHO5, PHO80-PHO85, PHO81, This, Up-regulation, When. Use these groups to spot repeated connection types before inspecting the individual relationships.

Pho4

Top relations

related to Structure · 11
Pho4 → DNA, H1, H2, Helical, Molecules, PHO5, PHO81, PHO84, The DNA-binding, The PHO4, Yoshida
related to Up-regulation · 9
Pho4 → CDK, In, PHO2, PHO5, PHO80-PHO85, PHO81, This, Up-regulation, When
related to Suppression · 8
Pho4 → Additionally, Down, Msn5p, O’Neil, Pho2, PHO80-PHO50, This, Under
related to Mechanism · 7
Pho4 → Additionally, Nuclear Exchange, Pho2, Pho4's, The, This, When
related to External links · 3
Pho4 → Medicine Medical Subject Headings, MeSH, National Library
Alt. symbols · 1
Pho4 → YFR034C
Domains · 1
Pho4 → InterPro
NCBI gene · 1
Pho4 → 850594
PDB · 1
Pho4 → 1a0a
RefSeq · 1
Pho4 → NP_116692

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

protein factor transcription phosphate binding genes able yeast structure importin site dna homodimer gene seen nucleus bind pho5 bhlh found

Pho4 relationships Subject–Predicate–Object triples

TTTA extracted 49 structured relationships around Pho4. Examples in this analysis include Pho4 → Alt. symbols → YFR034C and Pho4 → Domains → InterPro. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
Pho4Alt. symbolsYFR034C1.00infobox
Pho4DomainsInterPro1.00infobox
Pho4NCBI gene8505941.00infobox
Pho4PDB1a0a1.00infobox
Pho4RefSeqNP_1166921.00infobox
Pho4Search forSearch forStructuresSwiss-modelDomainsInterPro1.00infobox
Pho4StructuresSwiss-model1.00infobox
Pho4SymbolPho41.00infobox
Pho4UniProtP072701.00infobox
Pho4is aprotein with a basic helix-loop-helix0.90text
the PHO5 geneinstance ofThis sequence is found in the promoters of genes up-regulated in response to phosphate availability0.80text
Pho4related to External linksNational Library0.60section

Related concept clusters Concept neighborhoods

The concept neighborhoods around Pho4 bring nearby vocabulary together. In this analysis, examples include Protein, Transcription and Factor. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • Pho4
    • Protein
    • Transcription
    • Factor
    • Binding
    • Able
    • Site
    • Importin
    • Phosphate
    • Dna
    • Homodimer
    • Pho2
    • Residues
  • pho4
    • Protein
    • Transcription
    • Factor
    • Binding
    • Able
    • Site
    • Importin
    • Phosphate
    • Dna
    • Homodimer
    • Pho2
    • Residues
  • transcription factor
    • Transcription
    • Bind
    • Pho4
    • Protein
    • Binding
    • Genes
    • Importin
    • Pho2
    • Yeast
    • Nucleus
    • Phosphate
    • Binds
  • phosphate
    • Seen
    • Yeast
    • Cells
    • Residues
    • Genes
    • Promoters
    • Transcription
    • Al
    • Et
    • Found
    • Regulation
    • Up-regulated
  • dna
    • Homodimer
    • Binds
    • Cyan
    • Regulation
    • Two
    • Up-regulation
    • Structure
    • Site
    • Yeast
    • Pho4
    • Protein
  • s. cerevisiae
    • Found
    • Protein
    • Pho4
  • promoters
    • Up-regulated
    • Gene
    • Pho5

Connections between topic areas Semantic bridges

Bridges highlight paths between different parts of the Pho4 map and can reveal research angles that are easy to miss in a flat list.

Min side: 3

Map overview Semantic statistics

Pho4

Nodes8
Edges7
Triples49
Avg. degree1.75
Density0.25
Components1

Source & methodology

TTTA analyzes the structure around Pho4 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Regions & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — Pho4 · EN edition · Analysis: TopicsToTalkAbout

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