PDLIM5

Use the mouse wheel or two fingers (on touchscreens) to zoom in and out of the map.

Export map as:

Research this topic

Explore the main themes, entities and connections around PDLIM5. Start with the topic map, then use the sections below for research and deeper semantic analysis.

Explore this topic

Start with a few of the strongest sections from the source topic. These are research directions, not a list of keywords you must use.

Interactions

Interact PRKCB1

2 related topics

Overview

Protein Gene N-terminus

3 related topics

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases: PDLIM5, ENH, ENH1, LIM, L9, PDZ and LIM domain 5
Available structures: Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2UZC, 2DAR
Band: 4q22.3 · 3|3 H1
Bgee: Skeletal muscle tissue of biceps brachii · Skeletal muscle tissue of rectus abdominis · right ventricle · triceps brachii muscle · glutes
BioGPS: More reference expression data
Chr.: Chromosome 4 (human) · Chromosome 3 (mouse)

Topics to explore

Browse the full topic structure. Each item opens a new analysis centered on that subject.

Overview

Interactions

Interact Protein-protein interaction
PRKCB1

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

Map overview Semantic statistics

Nodes8

Edges7

Triples90

Avg. degree1.75

Density0.25

Components1

How this topic connects Entity context

See the strongest relationship patterns around the current topic before diving into the raw triples.

PDLIM5

Top relations

Gene ontology · 28

PDLIM5 → actin binding, actin cytoskeleton, actin cytoskeleton organization, actinin binding, cadherin binding involved in cell-cell adhesion, cell growth involved in cardiac muscle cell development, cell junction, cell-cell adhesion, cytoplasm, cytosol, development of the heart, filamentous actin, membrane, metal ion binding, muscle alpha-actinin binding, muscle structure development, neuron projection, plasma membrane, postsynaptic density, postsynaptic membrane

Bgee · 19

PDLIM5 → atrioventricular valve, body of tongue, Epithelium of choroid plexus, gastrocnemius muscle, glutes, interventricular septum, medial head of gastrocnemius muscle, muscle of thigh, myocardium of ventricle, quadriceps femoris muscle, right ventricle, Skeletal muscle tissue of biceps brachii, Skeletal muscle tissue of rectus abdominis, soleus muscle, sternocleidomastoid muscle, thoracic diaphragm, tibialis anterior muscle, triceps brachii muscle, vastus lateralis muscle

RNA expression pattern · 19

Band · 2

PDLIM5 → 3|3 H1, 4q22.3

Chr. · 2

PDLIM5 → Chromosome 3 (mouse), Chromosome 4 (human)

End · 2

PDLIM5 → 142,101,457 bp, 94,668,227 bp

Aliases · 1

PDLIM5 → PDLIM5, ENH, ENH1, LIM, L9, PDZ and LIM domain 5

Available structures · 1

PDLIM5 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2UZC, 2DAR

BioGPS · 1

PDLIM5 → More reference expression data

Databases · 1

PDLIM5 → NCBI: entry; OMA: entry

Important terminology Word statistics

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

lim gene bp protein chr domain human band chromosome encoded proteins pdz involved location domains n-terminus interactions mouse cytoskeleton organization

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
PDLIM5	Aliases	PDLIM5, ENH, ENH1, LIM, L9, PDZ and LIM domain 5	1.00	infobox
PDLIM5	Available structures	Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes2UZC, 2DAR	1.00	infobox
PDLIM5	Band	4q22.3	1.00	infobox
PDLIM5	Band	3\|3 H1	1.00	infobox
PDLIM5	Bgee	Skeletal muscle tissue of biceps brachii	1.00	infobox
PDLIM5	Bgee	Skeletal muscle tissue of rectus abdominis	1.00	infobox
PDLIM5	Bgee	right ventricle	1.00	infobox
PDLIM5	Bgee	triceps brachii muscle	1.00	infobox
PDLIM5	Bgee	glutes	1.00	infobox
PDLIM5	Bgee	thoracic diaphragm	1.00	infobox
PDLIM5	Bgee	Epithelium of choroid plexus	1.00	infobox
PDLIM5	Bgee	muscle of thigh	1.00	infobox
PDLIM5	Bgee	gastrocnemius muscle	1.00	infobox
PDLIM5	Bgee	body of tongue	1.00	infobox
PDLIM5	Bgee	soleus muscle	1.00	infobox
PDLIM5	Bgee	myocardium of ventricle	1.00	infobox
PDLIM5	Bgee	atrioventricular valve	1.00	infobox
PDLIM5	Bgee	quadriceps femoris muscle	1.00	infobox
PDLIM5	Bgee	vastus lateralis muscle	1.00	infobox
PDLIM5	Bgee	interventricular septum	1.00	infobox
PDLIM5	Bgee	sternocleidomastoid muscle	1.00	infobox
PDLIM5	Bgee	tibialis anterior muscle	1.00	infobox
PDLIM5	Bgee	medial head of gastrocnemius muscle	1.00	infobox
PDLIM5	BioGPS	More reference expression data	1.00	infobox
PDLIM5	Chr.	Chromosome 4 (human)	1.00	infobox
PDLIM5	Chr.	Chromosome 3 (mouse)	1.00	infobox
PDLIM5	Databases	NCBI: entry; OMA: entry	1.00	infobox
PDLIM5	End	94,668,227 bp	1.00	infobox
PDLIM5	End	142,101,457 bp	1.00	infobox
PDLIM5	Ensembl	ENSG00000163110	1.00	infobox

Related concept clusters Concept neighborhoods

These clusters group vocabulary that occurs around closely connected concepts in the source material.

Connections between topic areas Semantic bridges

Bridges can reveal useful research angles that are easy to miss in a flat list of related terms.

Min side: 3