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NUP98: Interactions, Function & Overview

Nuclear pore complex protein Nup98-Nup96 is a protein that in humans is encoded by the NUP98 gene.

Language: English [EN]
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NUP98 topic overview

The analysis highlights Interactions, Function and Overview as prominent areas in the source structure around NUP98.

Related topics
9
Source areas
3
Connected nodes
12
Extracted relationships
118
Concept neighborhoods
7
Bridge connections
12

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Interactions · 6 topics
Overview · 2 topics
Function · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
NUP98, ADIR2, NUP196, NUP96, nucleoporin 98kDa, nucleoporin 98
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1KO6, 2Q5X, 2Q5Y, 3MMY, 4OWR, 5A9Q
Band
11p15.4 · 7 E2|7 54.71 cM
Bgee
left testis · right testis · epithelium of colon · secondary oocyte · ventricular zone
BioGPS
More reference expression data
Chr.
Chromosome 11 (human) · Chromosome 7 (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Function

Interactions

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How NUP98 connects Entity context

The extracted context around NUP98 shows recurring relationship patterns in the source. For example, NUP98 → cytosol, DNA replication, host cell, hydrolase activity, intracellular membrane-bounded organelle, intracellular transport of virus, kinetochore, membrane, mRNA binding, mRNA export from nucleus, mRNA transport, nuclear body, nuclear envelope, nuclear inclusion body, nuclear localization sequence binding, nuclear membrane, nuclear periphery, nuclear pore, nuclear pore complex assembly, nuclear pore cytoplasmic filaments Another extracted example is NUP98 → Achilles tendon, epithelium of colon, external carotid artery, genital tubercle, internal carotid artery, left ovary, left testis, left uterine tube, muscle of thigh, primary oocyte, right testis, secondary oocyte, spermatid, spermatocyte, tail of embryo, upper lobe of left lung, ventricular zone, vestibular membrane of cochlear duct, zygote. Use these groups to spot repeated connection types before inspecting the individual relationships.

NUP98

Top relations

Gene ontology · 53
NUP98 → cytosol, DNA replication, host cell, hydrolase activity, intracellular membrane-bounded organelle, intracellular transport of virus, kinetochore, membrane, mRNA binding, mRNA export from nucleus, mRNA transport, nuclear body, nuclear envelope, nuclear inclusion body, nuclear localization sequence binding, nuclear membrane, nuclear periphery, nuclear pore, nuclear pore complex assembly, nuclear pore cytoplasmic filaments
Bgee · 19
NUP98 → Achilles tendon, epithelium of colon, external carotid artery, genital tubercle, internal carotid artery, left ovary, left testis, left uterine tube, muscle of thigh, primary oocyte, right testis, secondary oocyte, spermatid, spermatocyte, tail of embryo, upper lobe of left lung, ventricular zone, vestibular membrane of cochlear duct, zygote
RNA expression pattern · 19
NUP98 → Achilles tendon, epithelium of colon, external carotid artery, genital tubercle, internal carotid artery, left ovary, left testis, left uterine tube, muscle of thigh, primary oocyte, right testis, secondary oocyte, spermatid, spermatocyte, tail of embryo, upper lobe of left lung, ventricular zone, vestibular membrane of cochlear duct, zygote
related to Interactions · 4
NUP98 → CREB-binding, KPNB1, NUP88, RAE1
Band · 2
NUP98 → 11p15.4, 7 E2|7 54.71 cM
Chr. · 2
NUP98 → Chromosome 11 (human), Chromosome 7 (mouse)
End · 2
NUP98 → 101,859,383 bp, 3,797,792 bp
Aliases · 1
NUP98 → NUP98, ADIR2, NUP196, NUP96, nucleoporin 98kDa, nucleoporin 98
Available structures · 1
NUP98 → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1KO6, 2Q5X, 2Q5Y, 3MMY, 4OWR, 5A9Q
BioGPS · 1
NUP98 → More reference expression data

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

gene bp human chr band chromosome 11 protein nucleoporin 98 nuclear pore complex location several mouse function kd external search

NUP98 relationships Subject–Predicate–Object triples

TTTA extracted 118 structured relationships around NUP98. Examples in this analysis include NUP98 → Aliases → NUP98, ADIR2, NUP196, NUP96, nucleoporin 98kDa, nucleoporin 98 and NUP98 → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1KO6, 2Q5X, 2Q5Y, 3MMY, 4OWR, 5A9Q. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
NUP98AliasesNUP98, ADIR2, NUP196, NUP96, nucleoporin 98kDa, nucleoporin 981.00infobox
NUP98Available structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes1KO6, 2Q5X, 2Q5Y, 3MMY, 4OWR, 5A9Q1.00infobox
NUP98Band11p15.41.00infobox
NUP98Band7 E2|7 54.71 cM1.00infobox
NUP98Bgeeleft testis1.00infobox
NUP98Bgeeright testis1.00infobox
NUP98Bgeeepithelium of colon1.00infobox
NUP98Bgeesecondary oocyte1.00infobox
NUP98Bgeeventricular zone1.00infobox
NUP98Bgeemuscle of thigh1.00infobox
NUP98Bgeeleft ovary1.00infobox
NUP98BgeeAchilles tendon1.00infobox
NUP98Bgeeleft uterine tube1.00infobox
NUP98Bgeeupper lobe of left lung1.00infobox
NUP98Bgeezygote1.00infobox
NUP98Bgeespermatid1.00infobox
NUP98Bgeeprimary oocyte1.00infobox
NUP98Bgeevestibular membrane of cochlear duct1.00infobox
NUP98Bgeetail of embryo1.00infobox
NUP98Bgeeinternal carotid artery1.00infobox
NUP98Bgeeexternal carotid artery1.00infobox
NUP98Bgeespermatocyte1.00infobox
NUP98Bgeegenital tubercle1.00infobox
NUP98BioGPSMore reference expression data1.00infobox
NUP98Chr.Chromosome 11 (human)1.00infobox
NUP98Chr.Chromosome 7 (mouse)1.00infobox
NUP98DatabasesNCBI: entry; OMA: entry1.00infobox
NUP98End3,797,792 bp1.00infobox
NUP98End101,859,383 bp1.00infobox
NUP98EnsemblENSG000001107131.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around NUP98 bring nearby vocabulary together. In this analysis, examples include Protein, External and Function. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • gene
    • Chromosome
    • Human
    • Location
    • Nup98
    • Several
    • Bp
    • Chr
    • 11p15
    • E2
    • End
    • External
    • Function
  • nuclear pore complex
    • Complex
    • Nuclear
    • Pore
    • Export
    • Import
    • Nup98
    • Protein
    • E2
    • End
    • External
    • Function
    • Lung
  • function
    • External
    • Search
    • Location
    • Export
    • Import
    • Nup98
    • Bp
    • Chr
    • Chromosome
    • Human
    • E2
    • End
  • NUP98
    • Protein
    • External
    • Function
    • Pore
    • Search
    • Location
    • Bp
    • Chr
    • Chromosome
    • Human
    • Export
    • Import
  • nup98
    • Protein
    • External
    • Function
    • Pore
    • Search
    • Location
    • Bp
    • Chr
    • Chromosome
    • Human
    • Export
    • Import
  • protein
    • Cleavage
    • Npc
    • Nucleoporins
    • Search
    • Splicing
    • Transport
    • Kd
  • creb-binding protein
    • Cleavage
    • Npc
    • Nucleoporins
    • Search
    • Splicing
    • Transport
    • Kd

Connections between topic areas Semantic bridges

For NUP98, one of the stronger structural bridges in this analysis connects NUP98 with Interactions. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
NUP98Interactions · splits 6 ⟂ 7
NUP98Overview · splits 10 ⟂ 3

Map overview Semantic statistics

NUP98

Nodes13
Edges12
Triples118
Avg. degree1.85
Density0.153846
Components1

Source & methodology

TTTA analyzes the structure around NUP98 to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Interactions, Function & Overview, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — NUP98 · EN edition · Analysis: TopicsToTalkAbout

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