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NeuronStudio

NeuronStudio was a non-commercial program created at Icahn School of Medicine at Mount Sinai by the Computational Neurobiology and Imaging Center. This program performed automatic tracing and reconstruction of neuron structures from confocal image stacks. The resulting models were then exported to a file using standard formats for further processing…

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Skeletonization and diameter estimation

SkeletonizationIntegerDendritesVoxelsMedial axis
6 related topics

Deconvolution

DeconvolutionPSFBlind deconvolution
3 related topics

Rayburst algorithm

Particle physics
1 related topics

Uses of NeuronStudio

Morphological
1 related topics

Topics to explore

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Overview

Deconvolution

Skeletonization and diameter estimation

Rayburst algorithm

Uses of NeuronStudio

Advanced semantic analysis

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Map overview Semantic statistics

NeuronStudio

Nodes23
Edges22
Triples25
Avg. degree1.91
Density0.086957
Components1

How this topic connects Entity context

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NeuronStudio

Top relations

related to External links · 15
NeuronStudio → Alfredo, Archived, Beta, CNIC, Lock-gray-alt-2, Lock-green, Lock-red-alt-2, Medicine, Mount Sinai School, November, Rodriguez, Source Code, Tools, Version, Wikisource-logo
related to Uses of NeuronStudio · 6
NeuronStudio → As, Dendritic, Further, NeuronStudio-based, The, This

Important terminology Word statistics

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Important terminology

skeletonization deconvolution diameter dendritic program algorithm tracing voxels accurate estimate spines vectors using spine geometry estimation uses data used distance

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
thin dendritesinstance ofFor small structures0.80text
spinesinstance ofFor small structures0.80text
comprising only a few voxels even at maximal imaging resolutioninstance ofFor small structures0.80text
the error can be significant if this measure is used directlyinstance ofFor small structures0.80text
NeuronStudiorelated to External linksLock-green0.60section
NeuronStudiorelated to External linksLock-gray-alt-20.60section
NeuronStudiorelated to External linksLock-red-alt-20.60section
NeuronStudiorelated to External linksWikisource-logo0.60section
NeuronStudiorelated to External linksRodriguez0.60section
NeuronStudiorelated to External linksAlfredo0.60section
NeuronStudiorelated to External linksTools0.60section
NeuronStudiorelated to External linksBeta0.60section

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    Min side: 3
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