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InterMine

InterMine is an open source data warehouse system, licensed under the LGPL 2.1. InterMine is used to create databases of biological data accessed by sophisticated web query tools. InterMine can be used to create databases from a single data set or can integrate multiple sources of data. Support is provided for several common biological formats and there…

Products, Supported data formats & Current projects (not exhaustive list)

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Supported data formats

ChadoGFF3FASTAGOUniProt
8 related topics

Current projects (not exhaustive list)

Wayback Machine
1 related topics

Overview

Open sourceLGPL 2.1Databases of biological dataSequence ontologyXML
5 related topics

Key facts & relationships

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Bookmarkable entities
Yes
Data release frequency
Quarterly
Description
Open source data warehouse system for the integration and analysis of biological data.
Download URL
https://github.com/intermine/intermine
License
LGPL 2.1
Organisms
varied

Topics to explore

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Overview

Supported data formats

Current projects (not exhaustive list)

Advanced semantic analysis

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Map overview Semantic statistics

InterMine

Nodes18
Edges17
Triples23
Avg. degree1.89
Density0.111111
Components1

How this topic connects Entity context

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InterMine

Top relations

related to Web application · 5
InterMine → An, It, Many, The InterMine, Users
related to Current projects (not exhaustive list) · 4
InterMine → An, InterMine Registry Generic Model, Organism DatabasemodENCODE Archived, Wayback MachineFlyMineHumanMineRatMineYeastMineTargetMineMitoMinerMouseMineZebrafishMineWormMineINDIGOThaleMineTargetMinePhytoMineMedicMineBovineMineHymenopteraMineSoyMineBeanMi…
related to External links · 4
InterMine → CambridgeWellcome TrustInterMine API Documentation, Genetics, InterMineDepartment, University
Bookmarkable entities · 1
InterMine → Yes
Data release frequency · 1
InterMine → Quarterly
Description · 1
InterMine → Open source data warehouse system for the integration and analysis of biological data.
Download URL · 1
InterMine → https://github.com/intermine/intermine
License · 1
InterMine → LGPL 2.1
Organisms · 1
InterMine → varied
Version · 1
InterMine → 1.6.6

Important terminology Word statistics

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Important terminology

data web biological create integrate formats open source warehouse model clients list used databases single multiple sources several easy system

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
InterMineBookmarkable entitiesYes1.00infobox
InterMineData release frequencyQuarterly1.00infobox
InterMineDescriptionOpen source data warehouse system for the integration and analysis of biological data.1.00infobox
InterMineDownload URLhttps://github.com/intermine/intermine1.00infobox
InterMineLicenseLGPL 2.11.00infobox
InterMineOrganismsvaried1.00infobox
InterMineVersion1.6.61.00infobox
InterMineWeb service URLhttp://iodocs.apps.intermine.org/1.00infobox
InterMineWebsitehttp://www.intermine.org/1.00infobox
InterMineis aopen source data warehouse system0.90text
InterMinerelated to Current projects (not exhaustive list)An0.60section
InterMinerelated to Current projects (not exhaustive list)InterMine Registry Generic Model0.60section

Related concept clusters Concept neighborhoods

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    Min side: 3
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