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InterMine: Products, Supported data formats & Current projects (not exhaustive list)

InterMine is an open source data warehouse system, licensed under the LGPL 2.1. InterMine is used to create databases of biological data accessed by sophisticated web query tools. InterMine can be used to create databases from a single data set or can integrate multiple sources of data. Support is provided for several common biological formats and there…

Language: English [EN]
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InterMine topic overview

The analysis highlights Products, Supported data formats and Current projects (not exhaustive list) as prominent areas in the source structure around InterMine.

Related topics
14
Source areas
3
Connected nodes
17
Extracted relationships
16
Related term clusters
8
Bridge connections
17

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Supported data formats · 8 topics
Overview · 5 topics
Current projects (not exhaustive list) · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Bookmarkable entities
Yes
Data release frequency
Quarterly
Description
Open source data warehouse system for the integration and analysis of biological data.
Download URL
https://github.com/intermine/intermine
License
LGPL 2.1
Organisms
varied

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Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Supported data formats

Current projects (not exhaustive list)

For the semantics nerds

You can skip this section if you’re here for content ideas and keyword inspiration.

Advanced semantic analysis

How InterMine connects Entity context

The extracted context around InterMine shows recurring relationship patterns in the source. For example, InterMine → InterMine Registry Generic Model, Organism DatabasemodENCODE Archived, Wayback MachineFlyMineHumanMineRatMineYeastMineTargetMineMitoMinerMouseMineZebrafishMineWormMineINDIGOThaleMineTargetMinePhytoMineMedicMineBovineMineHymenopteraMineSoyMineBeanMi… Another extracted example is InterMine → Many, The InterMine, Users. Use these groups to spot repeated connection types before inspecting the individual relationships.

InterMine

Top relations

related to Current projects (not exhaustive list) · 3
InterMine → InterMine Registry Generic Model, Organism DatabasemodENCODE Archived, Wayback MachineFlyMineHumanMineRatMineYeastMineTargetMineMitoMinerMouseMineZebrafishMineWormMineINDIGOThaleMineTargetMinePhytoMineMedicMineBovineMineHymenopteraMineSoyMineBeanMi…
related to Web application · 3
InterMine → Many, The InterMine, Users
Bookmarkable entities · 1
InterMine → Yes
Data release frequency · 1
InterMine → Quarterly
Description · 1
InterMine → Open source data warehouse system for the integration and analysis of biological data.
Download URL · 1
InterMine → https://github.com/intermine/intermine
License · 1
InterMine → LGPL 2.1
Organisms · 1
InterMine → varied
Version · 1
InterMine → 1.6.6
Web service URL · 1
InterMine → http://iodocs.apps.intermine.org/

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

data web biological create integrate formats open source warehouse model clients list used databases single multiple sources several easy system

InterMine relationships Subject–Predicate–Object triples

TTTA extracted 16 structured relationships around InterMine. Examples in this analysis include InterMine → Bookmarkable entities → Yes and InterMine → Data release frequency → Quarterly. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
InterMineBookmarkable entitiesYes1.00infobox
InterMineData release frequencyQuarterly1.00infobox
InterMineDescriptionOpen source data warehouse system for the integration and analysis of biological data.1.00infobox
InterMineDownload URLhttps://github.com/intermine/intermine1.00infobox
InterMineLicenseLGPL 2.11.00infobox
InterMineOrganismsvaried1.00infobox
InterMineVersion1.6.61.00infobox
InterMineWeb service URLhttp://iodocs.apps.intermine.org/1.00infobox
InterMineWebsitehttp://www.intermine.org/1.00infobox
InterMineis aopen source data warehouse system0.90text
InterMinerelated to Current projects (not exhaustive list)InterMine Registry Generic Model0.60section
InterMinerelated to Current projects (not exhaustive list)Organism DatabasemodENCODE Archived0.60section

Related concept clusters Related term clusters

The concept neighborhoods around InterMine bring nearby vocabulary together. In this analysis, examples include Data, List and Open. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • InterMine
    • Data
    • List
    • Open
    • Source
    • Warehouse
    • Web
    • Application
    • Databases
    • Documentation
    • Includes
    • Multiple
    • Projects
  • intermine
    • Data
    • List
    • Open
    • Source
    • Warehouse
    • Web
    • Application
    • Databases
    • Documentation
    • Includes
    • Multiple
    • Projects
  • databases of biological data
    • Used
    • Formats
    • Several
    • Biological
    • Data
    • Intermine
    • Multiple
    • Single
    • Sources
    • Web
    • Clients
    • Integrate
  • supported data formats
    • Several
    • Biological
    • Intermine
    • Web
    • Clients
    • Formats
    • Integrate
    • Warehouse
    • Application
    • Configure
    • Files
    • Organisms
  • open source
    • Source
    • System
    • List
    • Warehouse
    • Developer
    • Application
    • Documentation
    • Lgpl
    • Projects
    • User
    • Clients
    • Formats
  • xml
    • Service
    • Clients
    • Api
    • Custom
    • Easy
    • Files
    • Lgpl
    • Organisms
    • Users
    • Web
    • Integrate
    • Model
  • lgpl 2.1
    • Files
    • Organisms
    • Service
    • System
    • Users
    • Xml
    • Clients
    • Open
    • Source
    • Warehouse
    • Web
  • current projects (not exhaustive list)
    • Documentation
    • Projects
    • Open
    • Source
    • System
    • Application
    • User
    • Warehouse
    • Model
    • Web

Connections between topic areas Semantic bridges

For InterMine, one of the stronger structural bridges in this analysis connects InterMine with Supported data formats. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
InterMine — Supported data formats · splits 9 ⟂ 9
InterMine — Overview · splits 12 ⟂ 6

Map overview Semantic statistics

InterMine

Nodes18
Edges17
Triples16
Avg. degree1.89
Density0.111111
Components1

Source & methodology

TTTA analyzes the structure around InterMine to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Products, Supported data formats & Current projects (not exhaustive list), including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — InterMine · EN edition · Analysis: TopicsToTalkAbout

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