Ensembl genome database project

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Explore the main themes, entities and connections around Ensembl genome database project. Start with the topic map, then use the sections below for research and deeper semantic analysis.

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History

Base pairs Genes Annotation Pattern-matching Protein

21 related topics

Displaying genomic data

Reference genome Karyotypes Amino acid Trees Homologues

9 related topics

Alternative access methods

API Scripts Comparative genomics BioMart

4 related topics

Overview

European Bioinformatics Institute Genomes Vertebrates Model organisms Genome browsers

9 related topics

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Description: Ensembl
Primary citation: Yates, et al. (2020)
Research center: European Bioinformatics Institute

Topics to explore

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Overview

European Bioinformatics Institute
Genomes Genome
Vertebrates Vertebrate
Model organisms Model organism
Genome browsers Genome browser
Genomic
Databases Database
NCBI National Center for Biotechnology Information
The University of California, Santa Cruz (UCSC) UCSC Genome Browser

History

Displaying genomic data

Reference genome
Karyotypes Karyotype
Amino acid
Trees
Homologues Homology (biology)
FASTA FASTA format
BED BAM (file format)
PSL PSL (file format)?action=edit&redlink=1
GD GD Graphics Library

Alternative access methods

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

Map overview Semantic statistics

Nodes48

Edges47

Triples21

Avg. degree1.96

Density0.041667

Components1

How this topic connects Entity context

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Ensembl genome database project

Top relations

Description · 1

Ensembl genome database project → Ensembl

Primary citation · 1

Ensembl genome database project → Yates, et al. (2020)

Research center · 1

Ensembl genome database project → European Bioinformatics Institute

Website · 1

Ensembl genome database project → www.ensembl.org

is a · 1

Ensembl genome database project → scientific project at the European Bioinformatics Institute

Important terminology Word statistics

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Important terminology

ensembl data genome project genes database website access species annotation genomes databases display provides genomic mysql api also vertebrates using

Entity relationships Subject–Predicate–Object triples

Subject	Predicate	Object	Confidence	Src
Ensembl genome database project	Description	Ensembl	1.00	infobox
Ensembl genome database project	Primary citation	Yates, et al. (2020)	1.00	infobox
Ensembl genome database project	Research center	European Bioinformatics Institute	1.00	infobox
Ensembl genome database project	Website	www.ensembl.org	1.00	infobox
Ensembl genome database project	is a	scientific project at the European Bioinformatics Institute	0.90	text
mouse	instance of	including key model organisms	0.80	text
fruitfly	instance of	including key model organisms	0.80	text
zebrafish	instance of	including key model organisms	0.80	text
Rapid Release	instance of	adding some new innovative features	0.80	text
a new website designed to make genome annotation data available more quickly to users	instance of	adding some new innovative features	0.80	text
and COVID-19	instance of	adding some new innovative features	0.80	text
a new website to access to SARS-CoV-2 reference genome	instance of	adding some new innovative features	0.80	text

Related concept clusters Concept neighborhoods

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Connections between topic areas Semantic bridges

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Min side: 3