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GeneRIF

A GeneRIF or Gene Reference Into Function is a short (255 characters or fewer) statement about the function of a gene. GeneRIFs provide a simple mechanism for allowing scientists to add to the functional annotation of genes described in the Entrez Gene database. In practice, function is constructed quite broadly. For example, there are GeneRIFs that…

Example & Overview

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Explore the main themes, entities and connections around GeneRIF. Start with the topic map, then use the sections below for research and deeper semantic analysis.

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Example

Entrez GeneTP53PubMed
3 related topics

Overview

MechanismScientistsAnnotationGenesNCBI
10 related topics

Topics to explore

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Overview

Example

Advanced semantic analysis

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Map overview Semantic statistics

GeneRIF

Nodes16
Edges15
Triples43
Avg. degree1.88
Density0.125
Components1

How this topic connects Entity context

See the strongest relationship patterns around the current topic before diving into the raw triples.

GeneRIF

Top relations

related to External links · 17
GeneRIF → AMIA Annu Symp Proc, Aronson AR, Folk LC, Gene, GeneRIFs, Humphrey SM, Lock-gray-alt-2, Lock-green, Lock-red-alt-2, Mitchell JA, Mork JG, NCBI's, NLM's GeneRIFs, PMC, PMID, Ward JM, Wikisource-logo
related to References · 17
GeneRIF → Archived, Biocomputing, Bretonnel Cohen, Finding GeneRIFs, Gene Ontology, GeneRIFs, Lawrence Hunter, Lu, Pacific Symposium, Paper, PDF, Proc, Ravi Teja Bhupatiraju, Text Retrieval Conference, TREC Genomics Track Overview, William Hersh, Zhiyong
related to Example · 9
GeneRIF → COX-2, Entrez Gene, GeneID, GeneRIFs, Here, HIPK2, Note, The PubMed, TP53

Important terminology Word statistics

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

generifs gene pubmed function id describing 255 entrez document characters genes species pdf paper statement database specific identified title valid

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
GeneRIFrelated to ExampleHere0.60section
GeneRIFrelated to ExampleGeneRIFs0.60section
GeneRIFrelated to ExampleEntrez Gene0.60section
GeneRIFrelated to ExampleGeneID0.60section
GeneRIFrelated to ExampleTP530.60section
GeneRIFrelated to ExampleThe PubMed0.60section
GeneRIFrelated to ExampleNote0.60section
GeneRIFrelated to ExampleHIPK20.60section
GeneRIFrelated to ExampleCOX-20.60section
GeneRIFrelated to External linksNCBI's0.60section
GeneRIFrelated to External linksGeneRIFs0.60section
GeneRIFrelated to External linksLock-green0.60section

Related concept clusters Concept neighborhoods

These clusters group vocabulary that occurs around closely connected concepts in the source material.

    Connections between topic areas Semantic bridges

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    Min side: 3
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