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AT-hook

The AT-hook is a DNA-binding motif present in many proteins, including the high-mobility group (HMG) proteins, DNA-binding proteins from plants and hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex.

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Key facts & relationships

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AlphaFold
IPR017956 · PF02178
Available protein structures:
IPR017956 · PF02178
InterPro
IPR017956
PDB
IPR017956 PF02178 (ECOD; PDBsum)
Pfam
PF02178
SCOP2
2eze / SCOPe / SUPFAM

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Overview

Structure

Advanced semantic analysis

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Map overview Semantic statistics

AT-hook

Nodes20
Edges19
Triples37
Avg. degree1.9
Density0.1
Components1

How this topic connects Entity context

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AT-hook

Top relations

related to Structure · 17
AT-hook → AAAT, AATT, AT, AT-hooks, ATAA, DNA, DNA-bound AT-hook, HMGA, In, NMR, TATT, The, The AT-hook, The DNA, This, Van, Waals
related to Function · 9
AT-hook → Arg38, AT-rich DNA, DNA, Gly37, HMG, NH, That, The, The AT-hooks
AlphaFold · 2
AT-hook → IPR017956, PF02178
Available protein structures: · 2
AT-hook → IPR017956, PF02178
InterPro · 1
AT-hook → IPR017956
PDB · 1
AT-hook → IPR017956 PF02178 (ECOD; PDBsum)
Pfam · 1
AT-hook → PF02178
SCOP2 · 1
AT-hook → 2eze / SCOPe / SUPFAM
SMART · 1
AT-hook → AT_hook
Symbol · 1
AT-hook → AT_hook

Important terminology Word statistics

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Important terminology

proteins dna groove minor at-hooks position interactions hmg human complex binding hook protein motif structure core sequence although form many

Entity relationships Subject–Predicate–Object triples

SubjectPredicateObjectConfidenceSrc
AT-hookAlphaFoldIPR0179561.00infobox
AT-hookAlphaFoldPF021781.00infobox
AT-hookAvailable protein structures:IPR0179561.00infobox
AT-hookAvailable protein structures:PF021781.00infobox
AT-hookInterProIPR0179561.00infobox
AT-hookPDBIPR017956 PF02178 (ECOD; PDBsum)1.00infobox
AT-hookPfamPF021781.00infobox
AT-hookSCOP22eze / SCOPe / SUPFAM1.00infobox
AT-hookSMARTAT_hook1.00infobox
AT-hookSymbolAT_hook1.00infobox
AT-hookis aDNA-binding motif present in many proteins0.90text
AT-hookrelated to FunctionNH0.60section

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    Min side: 3
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