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APOBEC3D: Overview & Function

Probable DNA dC->dU-editing enzyme APOBEC-3D is a protein that in humans is encoded by the APOBEC3D gene.

Language: English [EN]
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APOBEC3D topic overview

The analysis highlights Overview and Function as prominent areas in the source structure around APOBEC3D.

Related topics
16
Source areas
2
Connected nodes
18
Extracted relationships
60
Concept neighborhoods
18
Bridge connections
18

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Overview · 15 topics
Function · 1 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
APOBEC3D, A3D, APOBEC3DE, APOBEC3E, ARP6, apolipoprotein B mRNA editing enzyme catalytic subunit 3D, A3DE
Band
22q13.1
Bgee
granulocyte · lymph node · spleen · bone marrow cell · blood
BioGPS
n/a
Chr.
Chromosome 22 (human)
Databases
NCBI: entry; OMA: entry

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Function

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How APOBEC3D connects Entity context

The extracted context around APOBEC3D shows recurring relationship patterns in the source. For example, APOBEC3D → catalytic activity, cytidine deaminase activity, cytidine deamination, cytidine to uridine editing, cytoplasm, defense response to virus, DNA cytosine deamination, DNA demethylation, hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines, immune system process, innate immune response, metal ion binding, negative regulation of single stranded viral RNA replication via double stranded DNA intermediate, negative regulation of transposition, nucleus, P-body, RNA binding, zinc ion binding Another extracted example is APOBEC3D → appendix, blood, bone marrow cell, gallbladder, granulocyte, lymph node, monocyte, rectum, right uterine tube, spleen. Use these groups to spot repeated connection types before inspecting the individual relationships.

APOBEC3D

Top relations

Gene ontology · 19
APOBEC3D → catalytic activity, cytidine deaminase activity, cytidine deamination, cytidine to uridine editing, cytoplasm, defense response to virus, DNA cytosine deamination, DNA demethylation, hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines, immune system process, innate immune response, metal ion binding, negative regulation of single stranded viral RNA replication via double stranded DNA intermediate, negative regulation of transposition, nucleus, P-body, RNA binding, zinc ion binding
Bgee · 10
APOBEC3D → appendix, blood, bone marrow cell, gallbladder, granulocyte, lymph node, monocyte, rectum, right uterine tube, spleen
RNA expression pattern · 10
APOBEC3D → appendix, blood, bone marrow cell, gallbladder, granulocyte, lymph node, monocyte, rectum, right uterine tube, spleen
related to Function · 3
APOBEC3D → APOBEC3, HIV-1, HIV-1 Vif
related to External links · 2
APOBEC3D → Human APOBEC3D, UCSC Genome Browser
Aliases · 1
APOBEC3D → APOBEC3D, A3D, APOBEC3DE, APOBEC3E, ARP6, apolipoprotein B mRNA editing enzyme catalytic subunit 3D, A3DE
Band · 1
APOBEC3D → 22q13.1
BioGPS · 1
APOBEC3D → n/a
Chr. · 1
APOBEC3D → Chromosome 22 (human)
Databases · 1
APOBEC3D → NCBI: entry; OMA: entry

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

gene human chromosome 22 cytidine deaminase bp cluster chr location related protein cytosine band dna enzyme function external one mrna

APOBEC3D relationships Subject–Predicate–Object triples

TTTA extracted 60 structured relationships around APOBEC3D. Examples in this analysis include APOBEC3D → Aliases → APOBEC3D, A3D, APOBEC3DE, APOBEC3E, ARP6, apolipoprotein B mRNA editing enzyme catalytic subunit 3D, A3DE and APOBEC3D → Band → 22q13.1. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
APOBEC3DAliasesAPOBEC3D, A3D, APOBEC3DE, APOBEC3E, ARP6, apolipoprotein B mRNA editing enzyme catalytic subunit 3D, A3DE1.00infobox
APOBEC3DBand22q13.11.00infobox
APOBEC3DBgeegranulocyte1.00infobox
APOBEC3DBgeelymph node1.00infobox
APOBEC3DBgeespleen1.00infobox
APOBEC3DBgeebone marrow cell1.00infobox
APOBEC3DBgeeblood1.00infobox
APOBEC3DBgeeappendix1.00infobox
APOBEC3DBgeeright uterine tube1.00infobox
APOBEC3DBgeemonocyte1.00infobox
APOBEC3DBgeegallbladder1.00infobox
APOBEC3DBgeerectum1.00infobox
APOBEC3DBioGPSn/a1.00infobox
APOBEC3DChr.Chromosome 22 (human)1.00infobox
APOBEC3DDatabasesNCBI: entry; OMA: entry1.00infobox
APOBEC3DEnd39,033,277 bp1.00infobox
APOBEC3DEnsemblENSG000002438111.00infobox
APOBEC3DEntrez1405641.00infobox
APOBEC3DExternal IDsOMIM: 609900; GeneCards: APOBEC3D1.00infobox
APOBEC3DGene location (Human)Gene location (Human)Chr.Chromosome 22 (human)Band22q13.1Start39,021,113 bpEnd39,033,277 bp1.00infobox
APOBEC3DGene ontologyhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines1.00infobox
APOBEC3DGene ontologyzinc ion binding1.00infobox
APOBEC3DGene ontologycatalytic activity1.00infobox
APOBEC3DGene ontologyhydrolase activity1.00infobox
APOBEC3DGene ontologymetal ion binding1.00infobox
APOBEC3DGene ontologyRNA binding1.00infobox
APOBEC3DGene ontologycytidine deaminase activity1.00infobox
APOBEC3DGene ontologycytoplasm1.00infobox
APOBEC3DGene ontologyP-body1.00infobox
APOBEC3DGene ontologynucleus1.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around APOBEC3D bring nearby vocabulary together. In this analysis, examples include Location, Gene and Human. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • APOBEC3D
    • Location
    • Gene
    • Human
    • Catalytic
    • Dna
    • Editing
    • Enzyme
    • Function
    • Hiv-1
    • Mrna
    • Protein
    • Ucsc
  • apobec3d
    • Location
    • Gene
    • Human
    • Catalytic
    • Dna
    • Editing
    • Enzyme
    • Function
    • Hiv-1
    • Mrna
    • Protein
    • Ucsc
  • cytidine deaminase
    • Deaminase
    • Cytosine
    • Apobec1
    • Deaminating
    • Hiv
    • Inhibit
    • Nascent
    • Residues
    • Retroviruses
    • Gene
    • Band
    • Catalytic
  • gene
    • Location
    • Chromosome
    • Human
    • Catalytic
    • Editing
    • Function
    • Mrna
    • One
    • Protein
    • Ucsc
    • Bp
    • Chr
  • gene family
    • Location
    • Chromosome
    • Human
    • Catalytic
    • Editing
    • Function
    • Mrna
    • One
    • Protein
    • Ucsc
    • Bp
    • Chr
  • gene duplication
    • Location
    • Chromosome
    • Human
    • Catalytic
    • Editing
    • Function
    • Mrna
    • One
    • Protein
    • Ucsc
    • Bp
    • Chr
  • chromosome 22
    • Bp
    • Chr
    • Human
    • Band
    • Catalytic
    • Editing
    • Function
    • Mrna
    • One
    • Gene
    • Location
    • External
  • cytosine
    • Deaminase
    • Deaminating
    • Hiv
    • Inhibit
    • Nascent
    • Residues
    • Retroviruses
    • Band
    • Catalytic
    • Dna
    • Editing
    • Function

Connections between topic areas Semantic bridges

For APOBEC3D, one of the stronger structural bridges in this analysis connects APOBEC3D with Overview. Bridges highlight paths between different parts of the map and can reveal research angles that are easy to miss in a flat list.

Min side: 3
APOBEC3DOverview · splits 3 ⟂ 16

Map overview Semantic statistics

APOBEC3D

Nodes19
Edges18
Triples60
Avg. degree1.89
Density0.105263
Components1

Source & methodology

TTTA analyzes the structure around APOBEC3D to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Overview & Function, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — APOBEC3D · EN edition · Analysis: TopicsToTalkAbout

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