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ALYREF: Regions & Measurement

Aly/REF export factor, also known as THO complex subunit 4, is a protein that in humans is encoded by the ALYREF gene.

Language: English [EN]
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ALYREF topic overview

The analysis highlights Regions and Measurement as prominent areas in the source structure around ALYREF.

Related topics
10
Source areas
1
Connected nodes
11
Extracted relationships
97
Concept neighborhoods
9
Bridge connections
11

What this topic covers Research coverage

Source areas are shown by the number of related topics found in each part of the analysis. Use smaller areas too: they can reveal specialized angles and content gaps.

Overview · 10 topics

Smaller areas are not necessarily less important. They contain fewer connections in this analysis and can be useful for finding specialized angles or coverage gaps.

Key facts & relationships

High-confidence facts extracted from structured source data. Use them as anchors for further research.

Aliases
ALYREF, ALY, ALY/REF, BEF, REF, THOC4, Aly/REF export factor
Available structures
Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes3ULH
Band
17q25.3 · 11|11 E2
Bgee
ganglionic eminence · ventricular zone · stromal cell of endometrium · left testis · mucosa of transverse colon
BioGPS
n/a
Chr.
Chromosome 17 (human) · Chromosome 11 (mouse)

Explore all related topics Closing gaps

Browse the complete topic structure, not only the most central items. Less prominent entities and concepts can reveal missing angles, specialized context and useful research gaps. Each item opens a new analysis centered on that subject.

Overview

Advanced semantic analysis

Deeper signals for content research, entity SEO and topical coverage. The plain-language headings explain what each technical view is useful for.

How ALYREF connects Entity context

The extracted context around ALYREF shows recurring relationship patterns in the source. For example, ALYREF → catalytic step 2 spliceosome, cytoplasm, cytosol, exon-exon junction complex, extracellular exosome, membrane, mRNA 3'-end processing, mRNA export from nucleus, mRNA processing, mRNA splicing, via spliceosome, mRNA transport, nuclear speck, nucleic acid binding, nucleoplasm, nucleus, osteoblast differentiation, positive regulation of DNA-templated transcription, elongation, protein binding, regulation of DNA recombination, replication fork processing Another extracted example is ALYREF → abdominal wall, appendix, epiblast, ganglionic eminence, gastrula, granulocyte, left testis, mandibular prominence, maxillary prominence, monocyte, mucosa of transverse colon, renal corpuscle, right testis, skin of abdomen, somite, stromal cell of endometrium, thymus, ventricular zone, yolk sac. Use these groups to spot repeated connection types before inspecting the individual relationships.

ALYREF

Top relations

Gene ontology · 29
ALYREF → catalytic step 2 spliceosome, cytoplasm, cytosol, exon-exon junction complex, extracellular exosome, membrane, mRNA 3'-end processing, mRNA export from nucleus, mRNA processing, mRNA splicing, via spliceosome, mRNA transport, nuclear speck, nucleic acid binding, nucleoplasm, nucleus, osteoblast differentiation, positive regulation of DNA-templated transcription, elongation, protein binding, regulation of DNA recombination, replication fork processing
Bgee · 19
ALYREF → abdominal wall, appendix, epiblast, ganglionic eminence, gastrula, granulocyte, left testis, mandibular prominence, maxillary prominence, monocyte, mucosa of transverse colon, renal corpuscle, right testis, skin of abdomen, somite, stromal cell of endometrium, thymus, ventricular zone, yolk sac
RNA expression pattern · 19
ALYREF → abdominal wall, appendix, epiblast, ganglionic eminence, gastrula, granulocyte, left testis, mandibular prominence, maxillary prominence, monocyte, mucosa of transverse colon, renal corpuscle, right testis, skin of abdomen, somite, stromal cell of endometrium, thymus, ventricular zone, yolk sac
related to External links · 7
ALYREF → Overview, PDB, PDBe-KB, Q86V81, THO, UCSC Genome Browser, UniProt
Band · 2
ALYREF → 11|11 E2, 17q25.3
Chr. · 2
ALYREF → Chromosome 11 (mouse), Chromosome 17 (human)
End · 2
ALYREF → 120,489,191 bp, 81,891,586 bp
Aliases · 1
ALYREF → ALYREF, ALY, ALY/REF, BEF, REF, THOC4, Aly/REF export factor
Available structures · 1
ALYREF → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes3ULH
BioGPS · 1
ALYREF → n/a

Important terminology

Use these terms to understand the vocabulary surrounding the topic, not as a checklist for keyword stuffing.

Important terminology

aly human export gene protein mrna complex tho bp chr rna nuclear band chromosome 17 trex location ref factor binding

ALYREF relationships Subject–Predicate–Object triples

TTTA extracted 97 structured relationships around ALYREF. Examples in this analysis include ALYREF → Aliases → ALYREF, ALY, ALY/REF, BEF, REF, THOC4, Aly/REF export factor and ALYREF → Available structures → Available structuresPDBOrtholog search: PDBe RCSB List of PDB id codes3ULH. The table shows each extracted connection, where it came from and its confidence.

SubjectPredicateObjectConfidenceSrc
ALYREFAliasesALYREF, ALY, ALY/REF, BEF, REF, THOC4, Aly/REF export factor1.00infobox
ALYREFAvailable structuresAvailable structuresPDBOrtholog search: PDBe RCSB List of PDB id codes3ULH1.00infobox
ALYREFBand17q25.31.00infobox
ALYREFBand11|11 E21.00infobox
ALYREFBgeeganglionic eminence1.00infobox
ALYREFBgeeventricular zone1.00infobox
ALYREFBgeestromal cell of endometrium1.00infobox
ALYREFBgeeleft testis1.00infobox
ALYREFBgeemucosa of transverse colon1.00infobox
ALYREFBgeeright testis1.00infobox
ALYREFBgeemonocyte1.00infobox
ALYREFBgeegranulocyte1.00infobox
ALYREFBgeeappendix1.00infobox
ALYREFBgeeskin of abdomen1.00infobox
ALYREFBgeemaxillary prominence1.00infobox
ALYREFBgeemandibular prominence1.00infobox
ALYREFBgeesomite1.00infobox
ALYREFBgeeepiblast1.00infobox
ALYREFBgeeabdominal wall1.00infobox
ALYREFBgeerenal corpuscle1.00infobox
ALYREFBgeeyolk sac1.00infobox
ALYREFBgeegastrula1.00infobox
ALYREFBgeethymus1.00infobox
ALYREFBioGPSn/a1.00infobox
ALYREFChr.Chromosome 17 (human)1.00infobox
ALYREFChr.Chromosome 11 (mouse)1.00infobox
ALYREFDatabasesNCBI: entry; OMA: entry1.00infobox
ALYREFEnd81,891,586 bp1.00infobox
ALYREFEnd120,489,191 bp1.00infobox
ALYREFEnsemblENSG000001836841.00infobox

Related concept clusters Concept neighborhoods

The concept neighborhoods around ALYREF bring nearby vocabulary together. In this analysis, examples include Gene, Factor and Ref. Use the clusters to find adjacent concepts and terminology that may deserve separate research.

  • ALYREF
    • Gene
    • Factor
    • Ref
    • Export
    • Protein
    • Expressed
    • Molecular
    • Ucsc
    • Complex
    • Binding
    • Human
    • Location
  • alyref
    • Gene
    • Factor
    • Ref
    • Export
    • Protein
    • Expressed
    • Molecular
    • Ucsc
    • Complex
    • Binding
    • Human
    • Location
  • protein
    • Rna
    • Binding
    • Alyref
    • Mrna
    • Tho
    • Encoded
    • Expressed
    • Molecular
    • Gene
    • Ref
    • Subunit
    • Nuclear
  • gene
    • Location
    • Ref
    • Human
    • Chromosome
    • Bp
    • Chr
    • Protein
    • Expressed
    • Molecular
    • Mouse
    • Ucsc
    • Binding
  • nuclear protein
    • Rna
    • Binding
    • 3'-end
    • Molecular
    • Mrna
    • Processing
    • Alyref
    • Tho
    • Encoded
    • End
    • Expressed
    • Gene
  • molecular chaperone
    • Nuclear
    • Rna
    • Mrna
    • Protein
    • 3'-end
    • Expressed
    • Molecular
    • Mouse
    • Processing
    • Splicing
    • Step
    • Transcription
  • mrna
    • Nuclear
    • Rna
    • Protein
    • Tho
    • End
    • Trex
    • Human
    • 3'-end
    • Heterodimer
    • Interaction
    • Key
    • Mouse
  • transcription-export (trex) complex
    • Tho
    • Recruited
    • Mrna
    • Protein
    • Subunit
    • Export
    • Nuclear
    • Rna
    • Alyref
    • Expressed
    • Gene
    • Molecular

Connections between topic areas Semantic bridges

Bridges highlight paths between different parts of the ALYREF map and can reveal research angles that are easy to miss in a flat list.

Min side: 3

Map overview Semantic statistics

ALYREF

Nodes12
Edges11
Triples97
Avg. degree1.83
Density0.166667
Components1

Source & methodology

TTTA analyzes the structure around ALYREF to surface related topics, entities, relationships, concept neighborhoods and bridge connections. Use the map to explore areas such as Regions & Measurement, including less central topics that may reveal useful research gaps. Automatically extracted connections are research leads rather than rewritten encyclopedia content.

Source: Wikipedia — ALYREF · EN edition · Analysis: TopicsToTalkAbout

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